Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   GGS_RS05320 Genome accession   NC_018712
Coordinates   1065548..1066858 (-) Length   436 a.a.
NCBI ID   WP_012766987.1    Uniprot ID   A0AB38Y432
Organism   Streptococcus dysgalactiae subsp. equisimilis RE378     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1060548..1071858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGS_RS05290 (GGS_1007) - 1060983..1061372 (-) 390 WP_003058840.1 cytidine deaminase -
  GGS_RS05295 (GGS_1008) deoC 1061359..1062021 (-) 663 WP_015017040.1 deoxyribose-phosphate aldolase -
  GGS_RS05300 (GGS_1009) - 1062037..1063314 (-) 1278 WP_015017041.1 pyrimidine-nucleoside phosphorylase -
  GGS_RS05305 (GGS_1010) - 1063301..1063900 (-) 600 WP_015057597.1 class I SAM-dependent methyltransferase -
  GGS_RS05310 (GGS_1011) coaA 1064169..1065088 (+) 920 Protein_1014 type I pantothenate kinase -
  GGS_RS05315 rpsT 1065142..1065390 (+) 249 WP_009881183.1 30S ribosomal protein S20 -
  GGS_RS05320 (GGS_1012) ciaH 1065548..1066858 (-) 1311 WP_012766987.1 HAMP domain-containing sensor histidine kinase Regulator
  GGS_RS05325 (GGS_1013) ciaR 1066851..1067525 (-) 675 WP_003060678.1 response regulator transcription factor Regulator
  GGS_RS05330 (GGS_1014) - 1067729..1070266 (-) 2538 WP_042357920.1 M1 family metallopeptidase -
  GGS_RS05335 (GGS_1015) phoU 1070467..1071120 (-) 654 WP_015017046.1 phosphate signaling complex protein PhoU -

Sequence

Protein


Download         Length: 436 a.a.        Molecular weight: 49917.46 Da        Isoelectric Point: 8.2375

>NTDB_id=53964 GGS_RS05320 WP_012766987.1 1065548..1066858(-) (ciaH) [Streptococcus dysgalactiae subsp. equisimilis RE378]
MNKLKKEVFSDQYNHFFHFFAVFTGIFVVMTIIILQIMRFGVYSSVDSSLISVSNNASSYANRTMARISSFYFDAENNVI
KPLPDSDNSKLVGTPAANTDIILFSANGTILNSFDAFSNYQNFHLDKRQLGTIVTTSLINFYGQEEKYHTITVRVHIRNY
PAVAYMMAVVNVEQLDSANERYEQIIIIVMIIFWLISILASIYLSKWSRKPILESYEKQKMFVENASHELRTPLAVLQNR
LESLFRKPNETILENSEHLASSLDEVRNMRILTTNLLNLARRDDGINPQWTDLDATFFDAIFENYQLVAEENGKVFLFEN
QVNRILRMDKALLKQLMTILFDNAIKYTDKEGVVDIKVKTTEKNLLISVIDNGPGIKDEEKKKIFDRFYRVDKARTRQTG
GFGLGLALAQQIVISLKGSISVKDNLPKGSIFEVKL

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=53964 GGS_RS05320 WP_012766987.1 1065548..1066858(-) (ciaH) [Streptococcus dysgalactiae subsp. equisimilis RE378]
ATGAATAAATTAAAAAAAGAAGTCTTCTCTGACCAATACAACCATTTTTTTCATTTTTTTGCGGTTTTTACAGGTATTTT
TGTTGTGATGACCATCATTATTTTGCAGATTATGCGATTTGGTGTGTATTCTTCTGTCGATAGTAGTCTGATTTCTGTTA
GTAATAATGCAAGCAGTTATGCCAATCGTACTATGGCTAGAATATCCTCTTTTTACTTTGATGCAGAAAATAATGTTATT
AAACCTTTGCCTGATTCAGATAATTCAAAGCTAGTAGGAACACCGGCGGCAAACACAGATATTATCCTATTTAGTGCCAA
TGGCACAATTTTGAATTCCTTTGATGCTTTCTCCAATTATCAAAATTTTCATTTAGACAAGCGACAATTAGGGACGATTG
TTACTACTAGCCTGATTAATTTTTACGGTCAAGAGGAGAAGTATCATACCATAACAGTAAGGGTTCATATCAGAAATTAC
CCAGCTGTGGCATATATGATGGCAGTTGTCAACGTCGAGCAGTTGGACAGTGCCAACGAACGCTACGAACAAATTATTAT
CATTGTGATGATCATCTTCTGGTTAATTTCTATTTTGGCAAGTATTTATTTGTCCAAGTGGAGCCGAAAGCCGATTTTGG
AAAGTTATGAAAAACAAAAAATGTTTGTGGAAAATGCTAGTCATGAATTAAGAACCCCATTGGCTGTTTTGCAAAATCGC
TTAGAGTCTCTTTTCCGGAAGCCTAATGAAACCATATTGGAAAATAGTGAACATTTGGCTTCAAGTCTAGATGAAGTTCG
AAATATGCGTATTTTAACAACTAATCTCTTAAATTTAGCAAGACGTGATGATGGGATCAACCCTCAGTGGACTGACTTAG
ACGCTACCTTTTTTGATGCTATTTTTGAGAATTATCAGCTAGTTGCTGAAGAAAATGGCAAGGTATTTCTTTTCGAAAAT
CAAGTTAACCGCATCTTGAGAATGGACAAGGCTCTTTTGAAACAATTGATGACGATTTTATTTGATAATGCGATCAAATA
CACGGATAAAGAAGGCGTTGTTGACATTAAGGTCAAGACAACAGAGAAAAATCTCTTGATTTCAGTCATTGATAACGGTC
CAGGAATTAAAGATGAGGAAAAGAAAAAGATTTTTGACCGTTTTTATCGCGTTGATAAAGCTAGAACCCGTCAGACTGGA
GGCTTTGGCTTAGGCTTGGCCTTAGCTCAACAGATTGTGATATCACTCAAAGGAAGTATCAGCGTTAAGGATAACCTTCC
TAAGGGTAGTATCTTTGAAGTCAAACTATAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(220-285)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(329-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

58.124

100

0.583
  ciaH Streptococcus pneumoniae Rx1

51.37

100

0.516
  ciaH Streptococcus pneumoniae D39

51.37

100

0.516
  ciaH Streptococcus pneumoniae R6

51.37

100

0.516
  ciaH Streptococcus pneumoniae TIGR4

51.37

100

0.516

Multiple sequence alignment