Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JVB21_RS08520 Genome accession   NZ_CP070381
Coordinates   1698897..1699394 (+) Length   165 a.a.
NCBI ID   WP_075525978.1    Uniprot ID   -
Organism   Lactococcus taiwanensis strain K_LL001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1693897..1704394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVB21_RS08500 (JVB21_08500) - 1695061..1695477 (+) 417 WP_205271907.1 hypothetical protein -
  JVB21_RS08505 (JVB21_08505) - 1695512..1696972 (-) 1461 WP_200407745.1 amino acid permease -
  JVB21_RS08510 (JVB21_08510) - 1697489..1698343 (+) 855 WP_205271908.1 undecaprenyl-diphosphate phosphatase -
  JVB21_RS08515 (JVB21_08515) rpsF 1698579..1698872 (+) 294 WP_075525979.1 30S ribosomal protein S6 -
  JVB21_RS08520 (JVB21_08520) ssb 1698897..1699394 (+) 498 WP_075525978.1 single-stranded DNA-binding protein Machinery gene
  JVB21_RS08525 (JVB21_08525) rpsR 1699438..1699683 (+) 246 WP_075525977.1 30S ribosomal protein S18 -
  JVB21_RS08530 (JVB21_08530) - 1699834..1700619 (+) 786 WP_205271909.1 metallophosphoesterase -
  JVB21_RS08535 (JVB21_08535) - 1700680..1700988 (-) 309 WP_075525975.1 DUF960 domain-containing protein -
  JVB21_RS08540 (JVB21_08540) - 1701025..1701873 (-) 849 WP_205271910.1 MurR/RpiR family transcriptional regulator -
  JVB21_RS08545 (JVB21_08545) gnd 1702076..1702999 (+) 924 WP_205272748.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18166.99 Da        Isoelectric Point: 5.2279

>NTDB_id=539557 JVB21_RS08520 WP_075525978.1 1698897..1699394(+) (ssb) [Lactococcus taiwanensis strain K_LL001]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSTGSYSAPSQSTTNSRPQTNNNTATPNFGRDADPFGGSPMEISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=539557 JVB21_RS08520 WP_075525978.1 1698897..1699394(+) (ssb) [Lactococcus taiwanensis strain K_LL001]
ATGATTAACAATGTAGTATTAGTGGGACGCATTACACGCGATCCTGAACTTCGTTATACCCCACAAAATCAAGCTGTTGC
TACTTTCTCATTGGCGGTTAATCGTCAATTTAAGAACGCAAATGGCGAACGTGAGGCTGATTTTATTAACTGTGTGATCT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGGGCATTGATCGGAGTAACTGGTCGTATCCAAACGCGC
AATTATGAAAATCAACAAGGCCAACGGGTTTATGTGACGGAAGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTCGTTC
GGCTCGTGAAGGTATGGGCGGTGGAACTTCTACTGGTTCATATTCTGCACCAAGCCAATCTACAACTAATTCTCGACCAC
AAACGAATAATAATACCGCTACTCCGAATTTCGGACGTGATGCTGACCCATTTGGTGGCTCACCAATGGAAATTTCGGAT
GATGATCTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.234

100

0.624
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.14

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

64.242

0.376
  ssb Glaesserella parasuis strain SC1401

33.149

100

0.364
  ssb Neisseria meningitidis MC58

33.898

100

0.364