Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   JVB21_RS00505 Genome accession   NZ_CP070381
Coordinates   112051..113025 (+) Length   324 a.a.
NCBI ID   WP_205272109.1    Uniprot ID   -
Organism   Lactococcus taiwanensis strain K_LL001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 107051..118025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVB21_RS00485 (JVB21_00485) - 107285..108001 (+) 717 WP_205272107.1 Bax inhibitor-1/YccA family protein -
  JVB21_RS00490 (JVB21_00490) - 108190..109038 (-) 849 WP_075526200.1 Cof-type HAD-IIB family hydrolase -
  JVB21_RS00495 (JVB21_00495) - 109333..110754 (+) 1422 WP_200407378.1 NCS2 family permease -
  JVB21_RS00500 (JVB21_00500) - 110897..111976 (+) 1080 WP_205272108.1 YdcF family protein -
  JVB21_RS00505 (JVB21_00505) coiA 112051..113025 (+) 975 WP_205272109.1 competence protein CoiA Machinery gene
  JVB21_RS00510 (JVB21_00510) pepF 113113..114918 (+) 1806 WP_205272110.1 oligoendopeptidase F Regulator
  JVB21_RS00515 (JVB21_00515) - 114921..115607 (+) 687 WP_200407374.1 O-methyltransferase -
  JVB21_RS00520 (JVB21_00520) - 115768..116697 (+) 930 WP_200407373.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 38565.16 Da        Isoelectric Point: 9.4131

>NTDB_id=539532 JVB21_RS00505 WP_205272109.1 112051..113025(+) (coiA) [Lactococcus taiwanensis strain K_LL001]
MLTAVDEKNCLINLLETLPASRSKQYFCPFCHSEVVFKNGSIKLPHFAHKQLKACTLGNENESEQHLMLKKELYEWLKET
ESVEIEHYLPELRQTPDLLINGKVALEIQCSPLSLKRLHERTMNYRLHGFKVVWLMGRDLWLGNRLTELKKQLLCYSENH
GFHYWELDLTKRVLRLQSLIHEDLRGRLFYVTHSFLFKEKPLLDCLRTPFVQQELLKMAVYPDNQLQHFIHKQLFHKSPK
WLHLQSLYYQKGKNILDLDFMRPYIAPPGLNLLVPFKDNLTGSSFEQLSKIPVSYYQNFLDVFQKKKIEILYPPRFYAIM
KKQK

Nucleotide


Download         Length: 975 bp        

>NTDB_id=539532 JVB21_RS00505 WP_205272109.1 112051..113025(+) (coiA) [Lactococcus taiwanensis strain K_LL001]
ATGCTGACTGCCGTAGATGAAAAAAATTGCCTGATCAACTTGCTAGAAACCCTTCCCGCCTCACGAAGCAAACAATATTT
TTGTCCATTCTGTCATAGTGAGGTGGTTTTTAAAAATGGCTCCATCAAATTACCCCATTTTGCGCATAAGCAGTTGAAAG
CATGTACGTTAGGGAACGAAAATGAGTCAGAGCAACATCTGATGCTCAAAAAAGAACTTTATGAATGGCTGAAAGAAACA
GAATCAGTGGAAATTGAGCATTACTTACCAGAGCTTAGGCAGACCCCAGATCTATTAATCAATGGGAAAGTTGCCCTAGA
AATTCAATGTTCCCCCCTCTCCTTGAAACGGTTGCATGAGCGTACAATGAATTATCGCTTACACGGTTTTAAGGTGGTGT
GGTTAATGGGGAGGGATTTATGGTTAGGTAATCGTTTAACAGAATTGAAAAAACAACTGCTTTGTTATTCCGAAAATCAC
GGTTTTCATTACTGGGAATTGGATCTAACTAAACGTGTATTAAGACTACAGTCCCTGATTCATGAAGACTTAAGGGGACG
GTTGTTTTATGTGACACATTCCTTTTTGTTTAAAGAAAAACCGCTTTTGGACTGCTTGAGAACTCCATTTGTTCAGCAAG
AGCTTTTAAAAATGGCTGTTTACCCGGATAATCAATTGCAACACTTTATCCACAAGCAGCTTTTCCACAAATCCCCGAAA
TGGTTACATCTCCAATCGTTATACTATCAGAAAGGTAAAAATATCTTAGATCTGGACTTTATGCGTCCTTACATTGCCCC
ACCTGGATTAAATCTTCTTGTTCCTTTTAAGGATAACCTAACAGGATCCTCATTTGAACAACTCTCTAAAATTCCTGTAA
GCTATTATCAAAATTTTCTGGATGTGTTCCAAAAGAAGAAAATTGAGATACTCTATCCACCGCGGTTCTATGCTATAATG
AAGAAACAAAAATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(22-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

56.173

100

0.562
  coiA Streptococcus pneumoniae Rx1

40.312

98.765

0.398
  coiA Streptococcus pneumoniae D39

40.312

98.765

0.398
  coiA Streptococcus pneumoniae R6

40.312

98.765

0.398
  coiA Streptococcus pneumoniae TIGR4

40.312

98.765

0.398
  coiA Streptococcus mitis NCTC 12261

40

98.765

0.395