Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   JVB21_RS00510 Genome accession   NZ_CP070381
Coordinates   113113..114918 (+) Length   601 a.a.
NCBI ID   WP_205272110.1    Uniprot ID   -
Organism   Lactococcus taiwanensis strain K_LL001     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 108113..119918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVB21_RS00490 (JVB21_00490) - 108190..109038 (-) 849 WP_075526200.1 Cof-type HAD-IIB family hydrolase -
  JVB21_RS00495 (JVB21_00495) - 109333..110754 (+) 1422 WP_200407378.1 NCS2 family permease -
  JVB21_RS00500 (JVB21_00500) - 110897..111976 (+) 1080 WP_205272108.1 YdcF family protein -
  JVB21_RS00505 (JVB21_00505) coiA 112051..113025 (+) 975 WP_205272109.1 competence protein CoiA Machinery gene
  JVB21_RS00510 (JVB21_00510) pepF 113113..114918 (+) 1806 WP_205272110.1 oligoendopeptidase F Regulator
  JVB21_RS00515 (JVB21_00515) - 114921..115607 (+) 687 WP_200407374.1 O-methyltransferase -
  JVB21_RS00520 (JVB21_00520) - 115768..116697 (+) 930 WP_200407373.1 peptidyl-prolyl cis-trans isomerase -
  JVB21_RS00525 (JVB21_00525) alaS 116962..119580 (+) 2619 WP_205272111.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69832.52 Da        Isoelectric Point: 5.0458

>NTDB_id=539533 JVB21_RS00510 WP_205272110.1 113113..114918(+) (pepF) [Lactococcus taiwanensis strain K_LL001]
MAKERSEIQEAHTWDLSTIFATDEAWEKELEHVKQSVENSGERFSGHLLDSAQSLLKITEVMLELSQKVEKLYVYASMKN
DQDTRVAKYQEYQSKASNLYAKFGEAFAFYEPEFLTLQPSQLDEMMGTAPALKAYQHMFERLFAKKQHILSPKEEKLLAS
ASEIFGSASETFEIFDNADITFPKVKNEEGEQVQLTHGNFITLMESKDRSVRKAAYQALYSHYEQFQHTYAKTLQTNVKV
HNFNAQIRDYHSAREAALARDFIPERVYDVLIEAINQALPLLHRYMKLRQTVLQLPDLKMYDVYTPLSKLDYKFNYKEGV
EKAKEVLAIFGNEYRRRVESAFQERWIDVEENIGKRSGAYSGGSYDTKAFMLLNWQETLDDLFTLVHEMGHSMHSTFTRE
NQPYVYGEYPIFLAEIASTTNENILTETLLKESKDDKERFALLNHWLDSFKGTVFRQSQFAEFEQLIHEQDAKGEVLTSE
YLNRCYAELNEKYYGLLADENKEIQYEWARIPHFYYDFYVFQYATGFAAASYLAEKVVHGNDGDREKYIDYLKAGSSAYP
LDVISKAGVNMASGEYLTAAFDLFERRLTELEKLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=539533 JVB21_RS00510 WP_205272110.1 113113..114918(+) (pepF) [Lactococcus taiwanensis strain K_LL001]
ATGGCTAAAGAAAGAAGTGAAATTCAAGAAGCGCATACATGGGACTTATCCACCATTTTTGCGACTGACGAAGCTTGGGA
AAAAGAATTAGAACATGTGAAACAGAGTGTCGAAAATTCTGGGGAACGCTTTTCGGGACATTTGCTTGATTCGGCACAGA
GTCTTTTAAAGATAACAGAAGTTATGCTAGAATTGTCTCAAAAGGTTGAGAAACTATATGTTTATGCCTCTATGAAGAAT
GATCAGGATACACGTGTAGCGAAATATCAAGAATATCAATCCAAGGCATCAAATTTATATGCGAAGTTTGGGGAAGCCTT
TGCTTTTTACGAACCTGAATTTTTGACTTTACAACCCAGTCAATTGGATGAAATGATGGGGACAGCACCAGCTTTAAAAG
CTTATCAACATATGTTTGAACGCCTATTTGCTAAAAAACAACATATTCTTAGCCCTAAGGAAGAAAAATTGTTGGCTTCT
GCGAGTGAAATTTTTGGGAGTGCTTCAGAAACTTTCGAAATCTTTGATAATGCTGACATTACCTTTCCTAAGGTGAAAAA
CGAAGAGGGTGAACAAGTTCAATTAACACATGGCAACTTCATTACTTTAATGGAGAGCAAAGATAGATCAGTTCGTAAAG
CCGCTTACCAGGCACTATACAGCCATTATGAACAATTTCAACACACCTATGCAAAAACACTACAAACAAACGTGAAAGTT
CATAATTTTAATGCTCAAATTAGAGATTATCATTCTGCACGTGAAGCTGCTTTAGCGCGTGATTTTATCCCTGAGCGCGT
ATATGATGTTCTGATTGAAGCGATAAATCAAGCTCTTCCACTACTGCATCGATATATGAAACTCCGCCAAACTGTTCTGC
AACTACCAGACCTTAAAATGTATGATGTTTATACCCCGCTGTCCAAATTGGACTATAAATTTAATTACAAGGAAGGGGTA
GAAAAGGCAAAAGAAGTTCTAGCGATTTTTGGTAACGAATATCGTAGACGGGTAGAAAGTGCCTTCCAAGAACGATGGAT
TGATGTCGAAGAAAATATCGGAAAGCGTTCAGGTGCTTATTCTGGAGGTTCTTATGATACCAAGGCTTTTATGTTATTGA
ATTGGCAAGAAACATTAGATGATTTGTTCACCTTAGTTCATGAAATGGGCCATTCAATGCACAGTACTTTTACTCGAGAA
AATCAACCTTATGTATATGGAGAATATCCAATCTTTCTTGCGGAGATAGCATCAACTACTAATGAAAATATTTTAACAGA
GACTCTATTGAAAGAAAGCAAAGACGATAAAGAACGTTTTGCTTTACTTAACCACTGGCTAGATAGTTTTAAAGGAACAG
TATTTCGTCAAAGTCAGTTTGCAGAGTTTGAGCAACTTATTCATGAACAAGATGCAAAGGGAGAAGTGCTTACGAGTGAA
TATCTTAACCGTTGTTACGCAGAACTTAATGAGAAATATTACGGTCTTTTAGCTGATGAAAATAAAGAGATACAGTATGA
GTGGGCTAGAATTCCACACTTTTACTATGATTTTTACGTTTTTCAATATGCAACGGGATTTGCAGCTGCAAGTTACTTAG
CAGAAAAAGTTGTGCACGGTAATGATGGAGATCGTGAAAAATATATTGATTATTTGAAAGCAGGGTCATCTGCTTATCCC
CTTGATGTCATCTCAAAGGCCGGCGTTAATATGGCTTCAGGAGAATATCTAACCGCAGCTTTTGATTTATTCGAACGTCG
TTTAACTGAACTAGAAAAATTAGTAGAAAAAGGAGTACATTTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-182)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.892

100

0.649