Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   GGS_RS01800 Genome accession   NC_018712
Coordinates   351207..353177 (+) Length   656 a.a.
NCBI ID   WP_042357846.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis RE378     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 346207..358177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGS_RS01775 (GGS_0338) sufU 346250..346726 (+) 477 WP_003062583.1 Fe-S cluster assembly sulfur transfer protein SufU -
  GGS_RS01780 (GGS_0339) sufB 346719..348137 (+) 1419 WP_003054855.1 Fe-S cluster assembly protein SufB -
  GGS_RS01790 (GGS_0340) - 348313..349494 (-) 1182 WP_012766577.1 serine hydrolase -
  GGS_RS01795 (GGS_0341) pbp3 349638..350876 (-) 1239 WP_003057819.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  GGS_RS01800 (GGS_0342) amiA 351207..353177 (+) 1971 WP_042357846.1 peptide ABC transporter substrate-binding protein Regulator
  GGS_RS01805 (GGS_0343) amiC 353243..354745 (+) 1503 WP_003057826.1 ABC transporter permease Regulator
  GGS_RS01810 (GGS_0344) amiD 354745..355671 (+) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  GGS_RS01815 (GGS_0345) amiE 355680..356750 (+) 1071 WP_003060269.1 ABC transporter ATP-binding protein Regulator
  GGS_RS01820 (GGS_0346) amiF 356743..357666 (+) 924 WP_003057816.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72012.37 Da        Isoelectric Point: 4.9908

>NTDB_id=53945 GGS_RS01800 WP_042357846.1 351207..353177(+) (amiA) [Streptococcus dysgalactiae subsp. equisimilis RE378]
MKKSRWLATLGVAVLSVSVLAACGGKNASGGSDATKAYKYVFVNDPKSLDYILTNGGGTTDVITQMVDGLLENDEYGNLV
PSLAKDWKVSKDGLTYTYTLRDGVSWYTADGEEYAPVTAEDFVTGLKHAVDDKSDALYVVEDSIKNLKAYQNGEVDFKEV
GVKALDDKTVQYTLNKPESYWNSKTTYSVLFPVNAKFLKSKGKDFGTTDPSSILVNGAYFLSAFTSKSSMEFHKNENYWD
AKNVGIESVKLTYSDGSDPGSFYKNFDKGEFSVARLYPNDPTYKSAKKNYADNITYGMLTGDIRHLTWNLNRTSFKNTKK
DPAQQDAGKKALNNKDFRQAIQFAFDRASFQAQTAGQDAKTKALRNMLVPPTFVTIGENDFGSEVEKDLATMGDEWKDVN
LKDAQDGFYNPEKAKAEFAKAKEALTAEGVTFPVQLDYPVDQANAATVQEAQSFKQSVEASLGKENVIVNVLETETSTHE
AQGFYAETPEQQDYDIISSWWGPDYQDPRTYLDIMSPVGGGSVIQKLGIKAGQNQDVVAAAGLDTYQTLLDEAAAITDDN
DARYKAYAKAQAYLTDSAVDIPVVALGGTPRVSKAIPFSGGFSWAGAKGPLAYKGMKLQDKPVTAKQYEKAKEKWLKAKA
KSNAEYAEKLADHVEK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=53945 GGS_RS01800 WP_042357846.1 351207..353177(+) (amiA) [Streptococcus dysgalactiae subsp. equisimilis RE378]
ATGAAGAAAAGTAGATGGTTAGCAACTCTAGGTGTTGCGGTATTATCAGTATCCGTTTTAGCAGCTTGTGGTGGCAAAAA
TGCCTCAGGCGGTTCAGATGCAACTAAAGCTTACAAGTATGTGTTTGTTAACGATCCAAAATCGTTGGATTACATTTTAA
CAAATGGTGGCGGAACGACTGATGTGATAACACAAATGGTTGATGGTCTTTTGGAAAACGATGAGTATGGTAATTTAGTA
CCATCACTTGCTAAAGATTGGAAGGTTTCAAAAGACGGTCTGACATATACTTATACTCTTCGCGATGGTGTCTCTTGGTA
CACGGCTGATGGTGAAGAATACGCACCTGTAACAGCAGAAGATTTTGTGACTGGTTTGAAGCACGCGGTTGACGATAAAT
CAGATGCTCTTTACGTTGTTGAAGATTCAATAAAAAACTTAAAGGCTTACCAAAATGGTGAAGTAGATTTTAAAGAAGTT
GGTGTCAAAGCCCTTGACGATAAAACTGTTCAGTATACTTTGAACAAGCCTGAAAGCTACTGGAATTCAAAAACAACTTA
TAGTGTGCTTTTCCCAGTTAATGCGAAATTTTTGAAGTCAAAAGGTAAAGATTTTGGTACAACCGATCCATCATCAATCC
TTGTTAATGGTGCTTACTTCTTGAGCGCCTTCACCTCAAAATCATCTATGGAATTCCATAAAAATGAAAACTACTGGGAT
GCTAAGAATGTTGGGATAGAATCTGTTAAATTGACTTACTCAGATGGTTCAGACCCAGGTTCTTTCTACAAGAACTTTGA
CAAGGGTGAGTTCAGCGTTGCACGACTTTACCCAAATGACCCTACCTACAAATCAGCTAAGAAAAACTATGCTGATAACA
TTACTTACGGAATGTTGACTGGTGATATCCGTCATTTAACATGGAACTTGAACCGTACTTCTTTCAAAAATACTAAGAAA
GACCCTGCACAACAAGATGCCGGTAAGAAAGCTCTTAACAACAAGGACTTCCGTCAAGCTATCCAGTTTGCTTTTGACCG
TGCATCATTCCAAGCACAAACTGCAGGTCAGGATGCCAAAACAAAAGCCTTACGTAACATGCTTGTGCCACCAACTTTTG
TGACCATCGGAGAAAATGACTTTGGTTCAGAAGTTGAAAAAGACCTTGCTACCATGGGTGATGAATGGAAAGATGTTAAT
TTAAAAGATGCTCAAGATGGATTTTATAATCCTGAAAAAGCAAAAGCTGAGTTTGCAAAAGCCAAAGAAGCTTTGACAGC
TGAAGGTGTAACCTTCCCAGTTCAATTAGATTATCCTGTTGACCAAGCCAACGCAGCAACTGTTCAAGAGGCTCAATCCT
TTAAACAATCTGTTGAAGCATCACTTGGTAAAGAAAATGTCATTGTCAATGTTCTTGAAACAGAAACATCAACTCACGAA
GCCCAAGGCTTCTATGCTGAGACCCCAGAACAACAAGACTACGATATCATTTCATCATGGTGGGGACCAGACTACCAAGA
CCCACGTACCTACCTTGACATCATGAGTCCAGTAGGTGGTGGATCTGTTATCCAAAAACTTGGAATCAAAGCAGGTCAAA
ATCAGGATGTTGTGGCAGCTGCAGGCCTTGATACCTACCAAACTCTTCTTGATGAAGCAGCAGCAATTACAGACGATAAC
GATGCTCGTTACAAAGCTTATGCAAAAGCACAAGCCTACCTTACTGATAGTGCTGTAGATATTCCGGTTGTGGCCTTGGG
TGGTACTCCTCGTGTTTCTAAAGCTATTCCATTTAGCGGCGGCTTCTCTTGGGCAGGTGCTAAAGGACCTCTAGCATATA
AAGGAATGAAACTTCAAGACAAACCTGTCACAGCAAAACAATACGAAAAAGCAAAAGAAAAATGGTTGAAAGCAAAGGCT
AAATCAAACGCAGAATATGCTGAGAAATTAGCTGATCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

50.832

100

0.512
  amiA3 Streptococcus thermophilus LMG 18311

49.849

100

0.503
  amiA3 Streptococcus thermophilus LMD-9

49.547

100

0.5

Multiple sequence alignment