Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GGS_RS01815 Genome accession   NC_018712
Coordinates   355680..356750 (+) Length   356 a.a.
NCBI ID   WP_003060269.1    Uniprot ID   A0A9X9SP86
Organism   Streptococcus dysgalactiae subsp. equisimilis RE378     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 350680..361750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGS_RS01800 (GGS_0342) amiA 351207..353177 (+) 1971 WP_042357846.1 peptide ABC transporter substrate-binding protein Regulator
  GGS_RS01805 (GGS_0343) amiC 353243..354745 (+) 1503 WP_003057826.1 ABC transporter permease Regulator
  GGS_RS01810 (GGS_0344) amiD 354745..355671 (+) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  GGS_RS01815 (GGS_0345) amiE 355680..356750 (+) 1071 WP_003060269.1 ABC transporter ATP-binding protein Regulator
  GGS_RS01820 (GGS_0346) amiF 356743..357666 (+) 924 WP_003057816.1 ABC transporter ATP-binding protein Regulator
  GGS_RS01825 (GGS_0347) - 357694..358678 (-) 985 Protein_325 IS30 family transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39593.59 Da        Isoelectric Point: 5.6648

>NTDB_id=53948 GGS_RS01815 WP_003060269.1 355680..356750(+) (amiE) [Streptococcus dysgalactiae subsp. equisimilis RE378]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TELKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHSKAKELALDYMNKVGIPNATKRFDDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIELLKSLQKEYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLANESGELYSIPGTPPSLYSPIVGDAFALRSEYAMVLDFEETPPAISVSDTHWAK
TWLLHPEAPKVQKPAVIQDLHQKILKKMSRQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=53948 GGS_RS01815 WP_003060269.1 355680..356750(+) (amiE) [Streptococcus dysgalactiae subsp. equisimilis RE378]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTGGAATTCGACGTGCGCGACCGTGTTTTAACGGC
TATTCGGAACGTTTCTTTAGAGCTTGTTGAAGGAGAGGTCCTTGCTTTTGTAGGAGAATCAGGTTCAGGTAAATCTGTTT
TAACCAAGACCTTTACAGGGATGTTGGAGTCTAATGGACGTATTGCCAACGGCTCGATTGTCTACCGTGGTCAAGAATTA
ACAGAACTAAAAACGAATAAGGAATGGGCTAAGATTCGTGGTTCAAAAATTGCTACTATTTTCCAAGATCCAATGACCAG
TCTTAGTCCTATCAAAACCATTGGTAGCCAGATTACAGAGGTCATTATCAAGCATCAAAAAGTTAGCCATTCTAAAGCCA
AAGAATTGGCGCTTGATTATATGAATAAAGTTGGTATTCCAAATGCGACAAAGCGTTTTGATGACTATCCATTTGAATAT
TCAGGTGGTATGCGCCAACGTATTGTTATTGCCATTGCGTTAGCTTGCCGCCCAGATATCCTGATTTGTGATGAGCCCAC
AACAGCTCTCGACGTTACAATACAAGCCCAAATTATTGAATTGTTGAAATCACTTCAAAAAGAGTACCATTTTACGATTA
TTTTTATCACTCATGATTTAGGTGTTGTGGCAAGTATTGCTGACAAGGTTGCTGTCATGTATGCTGGTGAAATTGTCGAG
TTTGGAACTGTTGAAGAAATTTTCTATGATCCACGTCATCCTTACACATGGAGTTTATTGTCAAGCTTACCGCAATTAGC
CAATGAGTCAGGAGAACTTTACTCAATTCCAGGGACACCACCGTCACTTTATTCGCCAATCGTTGGAGATGCATTTGCGC
TTCGCTCAGAATATGCTATGGTTTTGGATTTCGAAGAGACACCACCTGCTATTAGTGTATCTGATACTCATTGGGCAAAA
ACATGGCTTTTGCACCCAGAGGCGCCAAAAGTTCAGAAACCGGCAGTTATTCAAGATTTACATCAAAAAATCTTGAAAAA
AATGTCACGACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

77.778

100

0.787
  amiE Streptococcus thermophilus LMG 18311

76.667

100

0.775
  amiE Streptococcus thermophilus LMD-9

76.667

100

0.775
  oppD Streptococcus mutans UA159

57.27

94.663

0.542

Multiple sequence alignment