Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   JWB57_RS18860 Genome accession   NZ_CP070358
Coordinates   3867390..3867950 (+) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB5075-VUB-itrA::ISAba13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3862390..3872950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWB57_RS18835 (JWB57_01445) - 3864531..3864661 (-) 131 Protein_3674 hypothetical protein -
  JWB57_RS18840 (JWB57_01450) rpoZ 3864700..3864978 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  JWB57_RS18845 (JWB57_01455) gmk 3865051..3865680 (-) 630 WP_000015937.1 guanylate kinase -
  JWB57_RS18850 (JWB57_01460) ispH 3865803..3866753 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  JWB57_RS18855 (JWB57_01465) fimU 3866923..3867396 (+) 474 WP_001214060.1 GspH/FimT family pseudopilin Machinery gene
  JWB57_RS18860 (JWB57_01470) pilV 3867390..3867950 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  JWB57_RS18865 (JWB57_01475) pilW 3867951..3868952 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  JWB57_RS18870 (JWB57_01480) pilX 3868949..3869767 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=539418 JWB57_RS18860 WP_002194578.1 3867390..3867950(+) (pilV) [Acinetobacter baumannii strain AB5075-VUB-itrA::ISAba13]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=539418 JWB57_RS18860 WP_002194578.1 3867390..3867950(+) (pilV) [Acinetobacter baumannii strain AB5075-VUB-itrA::ISAba13]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGTTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414