Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JVX96_RS07175 Genome accession   NZ_CP070343
Coordinates   1491708..1493252 (-) Length   514 a.a.
NCBI ID   WP_106936122.1    Uniprot ID   -
Organism   Variovorax sp. PDNC026     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1486708..1498252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX96_RS07165 (JVX96_07165) tagF 1488985..1489698 (+) 714 WP_081268130.1 type VI secretion system-associated protein TagF -
  JVX96_RS07170 (JVX96_07170) - 1489730..1491682 (+) 1953 WP_106936123.1 serine/threonine-protein kinase -
  JVX96_RS07175 (JVX96_07175) comM 1491708..1493252 (-) 1545 WP_106936122.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JVX96_RS07180 (JVX96_07180) - 1493469..1494335 (+) 867 WP_081268199.1 TorF family putative porin -
  JVX96_RS07185 (JVX96_07185) glnK 1494403..1494741 (+) 339 WP_007833403.1 P-II family nitrogen regulator -
  JVX96_RS07190 (JVX96_07190) amt 1494771..1496207 (+) 1437 WP_106936121.1 ammonium transporter -
  JVX96_RS07195 (JVX96_07195) - 1496392..1497324 (+) 933 WP_106936120.1 SMP-30/gluconolactonase/LRE family protein -
  JVX96_RS07200 (JVX96_07200) - 1497351..1498235 (+) 885 WP_106936119.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 54210.83 Da        Isoelectric Point: 7.9009

>NTDB_id=539254 JVX96_RS07175 WP_106936122.1 1491708..1493252(-) (comM) [Variovorax sp. PDNC026]
MSLSLVQGRALLGLEAASVTVEVHLANGLPSFTLVGLAETEVKEARERVRSAIQNAGLEYPNNKKIVVNLAPADLPKDSG
RFDLPIALGILAASGQIDGARLAGHEFAGELSLSGELRPVRGALAMALALHTRGVATRLVLPLDSAHEAALVPDGEVYGA
RHLLDVVRQFVVDTEAASQWPDPPPDGWARIRAAPGASAPRYADLADVKGHAGAKRALEIAAAGGHSLLMMGEPGSGKSM
LAQRFAGLLPAMSIEEALESAAVASLGGRFATERWMLRPTSAPHHTSSAVALVGGGSPPRPGEISRAHHGVLFLDEFPEF
ARSALEALREPLETGTITIARAARSAEFPARFQLIAAMNPCPCGYLGSASKACRCTPDQISRYQGKLSGPLLDRIDLHIE
VPAVSAQQLLDAPPGESTESIRGRVIAARERAMQRQGYANQSLQGSAIDQHAGLDDAARKFMFNAAAKLGWSARSTHRAL
KVARTIADLGSAQAVQVEHLAEAVQYRRALRGSA

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=539254 JVX96_RS07175 WP_106936122.1 1491708..1493252(-) (comM) [Variovorax sp. PDNC026]
ATGAGTTTGTCTTTGGTGCAGGGCCGAGCCTTGCTGGGGCTGGAAGCGGCCAGTGTCACGGTCGAGGTGCATCTGGCCAA
CGGCCTGCCCAGCTTCACGCTGGTCGGCCTGGCGGAAACCGAGGTCAAGGAAGCCCGCGAACGCGTGCGCTCGGCTATCC
AGAACGCGGGGCTCGAATACCCCAACAACAAGAAGATAGTGGTGAACCTGGCCCCCGCGGACCTGCCCAAGGACTCCGGG
CGCTTCGACCTGCCCATCGCGCTGGGCATCCTCGCGGCCAGCGGGCAGATCGACGGCGCCAGGCTGGCCGGACACGAGTT
CGCGGGCGAACTGTCGCTCTCGGGCGAGCTGAGGCCGGTGCGCGGCGCCCTGGCCATGGCGCTGGCCCTGCACACGCGCG
GCGTGGCGACGCGGCTGGTGCTGCCCCTGGACAGTGCGCACGAGGCCGCTCTGGTGCCCGACGGCGAGGTCTATGGCGCA
CGGCATCTGCTGGATGTGGTGCGGCAGTTCGTGGTCGACACCGAGGCAGCCTCGCAATGGCCCGATCCGCCGCCCGACGG
CTGGGCGCGGATCCGTGCGGCGCCCGGCGCCAGCGCACCGCGCTACGCCGACCTGGCCGACGTCAAGGGGCACGCGGGCG
CCAAACGCGCGCTGGAAATCGCCGCGGCCGGCGGCCACAGCCTGCTGATGATGGGCGAGCCGGGATCGGGCAAGTCGATG
CTCGCGCAGCGCTTCGCGGGGCTGCTGCCGGCCATGAGCATCGAGGAGGCGCTCGAGAGCGCGGCGGTGGCCAGCCTGGG
CGGCCGCTTCGCGACGGAGCGCTGGATGCTCCGGCCCACGTCTGCGCCGCATCACACGTCCAGCGCGGTGGCACTCGTAG
GTGGCGGTTCTCCGCCCCGGCCCGGAGAGATCTCGCGCGCGCACCACGGCGTTCTCTTCTTGGACGAGTTTCCGGAATTC
GCCCGCTCGGCGCTGGAGGCGCTGCGGGAGCCGCTGGAAACCGGCACCATCACCATTGCCCGCGCCGCCCGGAGTGCCGA
ATTCCCGGCCAGATTCCAGTTGATCGCCGCGATGAACCCCTGCCCTTGCGGCTACCTGGGTTCCGCTTCAAAAGCCTGCC
GCTGCACGCCCGACCAGATCTCGCGCTACCAGGGCAAGCTCAGCGGCCCGCTGCTCGACCGCATCGACCTGCACATCGAG
GTGCCCGCGGTGTCGGCGCAGCAACTGCTAGACGCGCCCCCCGGCGAATCGACGGAGAGCATCCGCGGCCGGGTGATCGC
CGCGCGCGAACGTGCGATGCAGCGCCAGGGGTACGCCAACCAGTCGCTGCAGGGCAGCGCGATCGACCAGCACGCCGGCC
TCGACGATGCGGCCCGCAAGTTCATGTTCAACGCGGCGGCCAAGCTGGGATGGTCCGCGCGCAGCACGCACCGCGCGCTG
AAGGTGGCACGCACGATCGCGGACCTGGGGTCGGCGCAGGCGGTGCAGGTGGAGCATCTGGCGGAGGCGGTGCAGTACCG
GCGGGCGCTGCGGGGCAGCGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(204-408)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(415-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.688

99.027

0.502
  comM Haemophilus influenzae Rd KW20

50

100

0.5
  comM Legionella pneumophila strain ERS1305867

49.805

100

0.498
  comM Legionella pneumophila str. Paris

49.805

100

0.498
  comM Glaesserella parasuis strain SC1401

49.902

99.416

0.496
  comM Vibrio campbellii strain DS40M4

49.116

99.027

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.47

99.805

0.434