Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C380_RS23430 Genome accession   NC_018708
Coordinates   5093796..5094350 (+) Length   184 a.a.
NCBI ID   WP_015016327.1    Uniprot ID   A0A8I1SA95
Organism   Acidovorax sp. KKS102     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5088796..5099350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C380_RS23420 (C380_23455) uvrA 5089184..5092273 (-) 3090 WP_015016325.1 excinuclease ABC subunit UvrA -
  C380_RS23425 (C380_23460) - 5092491..5093669 (+) 1179 WP_015016326.1 MFS transporter -
  C380_RS23430 (C380_23465) ssb 5093796..5094350 (+) 555 WP_015016327.1 single-stranded DNA-binding protein Machinery gene
  C380_RS23435 (C380_23470) - 5094730..5095305 (+) 576 WP_015016328.1 hypothetical protein -
  C380_RS23440 (C380_23475) - 5095410..5096123 (+) 714 WP_015016329.1 Bax inhibitor-1 family protein -
  C380_RS23445 (C380_23480) mnmA 5096260..5097429 (-) 1170 WP_015016330.1 tRNA 2-thiouridine(34) synthase MnmA -
  C380_RS23450 (C380_23485) - 5097426..5098367 (-) 942 WP_015016331.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19749.91 Da        Isoelectric Point: 5.9505

>NTDB_id=53905 C380_RS23430 WP_015016327.1 5093796..5094350(+) (ssb) [Acidovorax sp. KKS102]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDKWKDKQTGEMKEATEWHRVVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDQSGVEKYSTEIRADQMQMLGSRQGMGGGGQGGGQQGGGYDDGYGGDQGGYDQAPRRAAPAPRPMAAPAQRP
APAPVAQAPRAASGFDDMDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=53905 C380_RS23430 WP_015016327.1 5093796..5094350(+) (ssb) [Acidovorax sp. KKS102]
ATGGCATCCGTAAACAAAGTCATCATCGTCGGCAACCTGGGCCGCGACCCTGAAATGCGCACCTTCCCCAGTGGCGACCA
GGTGGCCAACGTGACGATTGCCACCACCGACAAGTGGAAAGACAAGCAGACCGGCGAAATGAAGGAAGCCACCGAGTGGC
ACCGCGTGGTTTTCAACGGCCGCTTGGCAGAAATCGCCGGCCAGTACCTGCGCAAGGGTTCGCAGGTGTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGAGCGGCGTCGAAAAGTACAGCACCGAAATCCGCGCCGACCAGATGCAGAT
GCTGGGCAGCCGCCAGGGCATGGGCGGTGGCGGCCAGGGCGGCGGACAACAAGGTGGCGGATACGACGACGGTTACGGTG
GCGACCAGGGCGGCTACGATCAGGCACCGCGCCGTGCCGCGCCCGCGCCACGCCCCATGGCCGCCCCCGCACAGCGCCCG
GCGCCCGCCCCTGTGGCACAGGCACCGCGCGCGGCCTCCGGCTTCGACGACATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.968

100

0.554
  ssb Vibrio cholerae strain A1552

52.105

100

0.538
  ssb Neisseria gonorrhoeae MS11

44.262

99.457

0.44
  ssb Neisseria meningitidis MC58

43.169

99.457

0.429

Multiple sequence alignment