Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JRC45_RS23225 Genome accession   NZ_CP070287
Coordinates   4703474..4704994 (+) Length   506 a.a.
NCBI ID   WP_204628924.1    Uniprot ID   -
Organism   Escherichia albertii strain Sample 168     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4698474..4709994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRC45_RS23200 (JRC45_23200) ilvE 4700028..4700957 (-) 930 WP_059271523.1 branched-chain-amino-acid transaminase -
  JRC45_RS23205 (JRC45_23205) ilvM 4700977..4701240 (-) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  JRC45_RS23210 (JRC45_23210) ilvG 4701237..4702883 (-) 1647 WP_208625565.1 acetolactate synthase 2 catalytic subunit -
  JRC45_RS23215 (JRC45_23215) ilvX 4702886..4702936 (-) 51 WP_001387183.1 peptide IlvX -
  JRC45_RS23220 (JRC45_23220) ilvL 4703023..4703121 (-) 99 WP_001311244.1 ilv operon leader peptide -
  JRC45_RS23225 (JRC45_23225) comM 4703474..4704994 (+) 1521 WP_204628924.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JRC45_RS23230 (JRC45_23230) maoP 4705020..4705358 (-) 339 WP_000840999.1 macrodomain Ori organization protein MaoP -
  JRC45_RS23235 (JRC45_23235) hdfR 4705477..4706316 (+) 840 WP_204628925.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55324.61 Da        Isoelectric Point: 9.2216

>NTDB_id=538992 JRC45_RS23225 WP_204628924.1 4703474..4704994(+) (comM) [Escherichia albertii strain Sample 168]
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLHEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEAEVGLINGEGCLIADHL
QTVCAFLEGKHALERPKPTDTVFRALQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIKS
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKAVVQG
ENSATVKQRVIAARERQFKRQNKLNAWLDSPEIRQYCKLKSNDAQWLEETLIHLGLSIRAWQRLLKVSRTIADIEQSDVI
TRQHLQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=538992 JRC45_RS23225 WP_204628924.1 4703474..4704994(+) (comM) [Escherichia albertii strain Sample 168]
ATGTCACTATCAATTGTTCATACTCGCGCAGCTCTGGGAGTAAATGCTCCGCCGATCACTGTTGAGGTACATATCAGCAA
AGGTCTACCCGGATTAACAATGGTGGGCTTACCAGAAACGACAGTAAAGGAAGCGCGTGATCGCGTACGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACTATTAACCTTGCACCTGCCGATCTGCCGAAAGAAGGAGGGCGA
TATGATTTACCTATCGCTATTGCTTTGCTGGCGGCTTCTGAACAGCTTACAGCCAATAAGTTGCATGAATATGAATTAGT
CGGTGAACTGGCGCTTACAGGAGCTTTGCGTGGCGTTCCCGGCGCAATTTCCAGTGCAACTGAAGCCATTAAGTCGGGCA
GAAAGATTATCGTCGCGAAAGATAACGAAGCTGAAGTAGGGTTAATTAATGGCGAAGGGTGCCTGATAGCCGATCATCTA
CAAACTGTCTGTGCATTTCTGGAAGGTAAACATGCTCTCGAACGTCCTAAACCAACTGATACAGTATTCCGGGCACTACA
ACATGATCTCAGTGATGTTGTCGGCCAGGAACAAGGAAAGCGAGGACTGGAAATTACCGCCGCTGGCGGGCACAACCTTT
TACTGATTGGGCCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTGTTGCCAGATTTAAGCAATGAA
GAGGCGCTGGAGAGTGCCGCGATATTAAGCCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGTCCGTTCCG
CTCACCGCATCACAGTGCGTCGTTAACTGCGATGGTGGGCGGTGGCGCAATTCCTGGGCCTGGTGAAATTTCGCTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAACTCCCTGAATTTGAACGACGTACATTGGATGCCTTGCGGGAACCCATAAAGTCA
GGACAGATCCATCTTTCACGCACACGAGCAAAAATAACTTATCCAGCCCGTTTCCAGCTTGTCGCGGCGATGAATCCCAG
CCCAACCGGACATTATCAGGGGAACCATAACCGCTGCACGCCAGAACAAACATTACGTTATCTCAACCGGCTTTCTGGTC
CCTTTCTCGACCGCTTCGATCTCTCACTGGAGATCCCACTACCGCCCCCCGGTATTTTAAGTAAAGCGGTAGTTCAGGGG
GAAAATAGCGCCACCGTTAAACAACGCGTCATAGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAGCTGAATGCCTG
GCTGGATAGCCCGGAGATACGCCAATACTGCAAACTTAAAAGCAACGATGCACAGTGGCTGGAGGAAACGTTGATACACC
TGGGATTATCGATTCGTGCCTGGCAACGACTACTGAAGGTATCAAGAACTATTGCTGATATTGAGCAATCTGACGTCATT
ACTCGCCAGCATTTACAGGAAGCGGTGAGCTATCGGGCTATCGACCGCCTGCTCATCCATTTGCAAAAACTGCTGACGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.513

100

0.591
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Vibrio campbellii strain DS40M4

57.57

99.209

0.571
  comM Legionella pneumophila str. Paris

48.193

98.419

0.474
  comM Legionella pneumophila strain ERS1305867

48.193

98.419

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.071

100

0.441