Detailed information NTG0053898

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: STRIC_RS09940
• Genome accession: NZ_AEUX02000007
• Coordinates: 432028..433032 (+)
• Length: 334 a.a.
• NCBI ID: WP_083835444.1
• Uniprot ID: -
• Organism: Streptococcus ictaluri 707-05
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 427028..438032

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STRIC_RS09920 (STRIC_2051)	purE	427531..428019 (+)	489	WP_008089954.1	5-(carboxyamino)imidazole ribonucleotide mutase	-
STRIC_RS09925 (STRIC_2052)	purK	428006..429097 (+)	1092	WP_008089612.1	5-(carboxyamino)imidazole ribonucleotide synthase	-
STRIC_RS09930 (STRIC_2053)	purB	429482..430774 (+)	1293	WP_008089717.1	adenylosuccinate lyase	-
STRIC_RS09935 (STRIC_2054)	comR	430907..431812 (+)	906	WP_008090260.1	helix-turn-helix domain-containing protein	Regulator
STRIC_RS12465	comS	431899..431997 (+)	99	WP_200857386.1	quorum-sensing system DWW-type pheromone	Regulator
STRIC_RS09940 (STRIC_2055)	ruvB	432028..433032 (+)	1005	WP_083835444.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
STRIC_RS09945 (STRIC_2056)	-	433232..433666 (+)	435	WP_008090238.1	low molecular weight protein-tyrosine-phosphatase	-
STRIC_RS09950 (STRIC_2057)	-	433704..434105 (+)	402	WP_008090358.1	MORN repeat-containing protein	-
STRIC_RS09955 (STRIC_2058)	-	434102..435880 (+)	1779	WP_008090122.1	acyltransferase family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37517.98 Da
• Isoelectric Point: 4.5482

>NTDB_id=53898 STRIC_RS09940 WP_083835444.1 432028..433032(+) (ruvB) [Streptococcus ictaluri 707-05]
MTRILDNEVMGDEEFVERTLRPQYLREYIGQDKVKDQLKIFIEAAKMRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGSGDSSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYQVDDLTEIVERTATIFDMAIVHEAAFELARRSRGTPRIANRLLKRVRDYAQIMGDGTVT
AQITDKALEMLDVDREGLDYVDQKILRTMIDMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATDK
AYQHLGYPLPSDTP

Nucleotide

• Length: 1005 bp

>NTDB_id=53898 STRIC_RS09940 WP_083835444.1 432028..433032(+) (ruvB) [Streptococcus ictaluri 707-05]
ATGACTAGAATTTTAGATAATGAGGTAATGGGTGATGAGGAGTTTGTTGAGCGAACTCTTAGGCCACAGTATTTACGAGA
ATACATTGGACAAGATAAGGTCAAAGATCAATTAAAGATTTTCATCGAGGCAGCTAAAATGCGAGATGAGTCGCTTGATC
ATGTCTTGTTATTTGGTCCTCCTGGTTTGGGGAAAACCACGATGGCTTTTGTCATTGCTAATGAGTTGGGAGTTAATTTA
AAGCAAACGTCAGGTCCAGCTATTGAAAAGGCAGGGGATTTGGTAGCCATTTTAAATGATTTAGAACCTGGCGACGTTTT
ATTTATTGATGAAATCCATCGCATGCCTATGGCGGTTGAAGAAGTTCTCTATAGTGCTATGGAAGATTTCTATATTGATA
TCATGATTGGGTCAGGAGACTCCAGTCGTAGTGTTCATTTGGATTTACCGCCTTTCACACTGATTGGGGCGACGACGCGT
GCGGGTATGCTTTCGAATCCCTTGCGGGCTCGTTTTGGGATTACAGGCCACATGGAATATTACCAAGTAGACGATTTAAC
AGAAATTGTTGAGCGGACAGCTACTATTTTTGACATGGCTATTGTGCATGAAGCCGCCTTTGAGTTGGCTCGCAGAAGTC
GAGGGACACCTCGTATTGCCAATCGCTTGCTCAAGCGTGTTCGTGATTATGCTCAAATTATGGGTGACGGAACGGTAACG
GCTCAAATCACTGATAAGGCATTAGAAATGCTTGATGTAGACCGAGAAGGCTTGGACTATGTCGATCAAAAGATTCTGCG
TACCATGATTGACATGTATAGCGGTGGGCCGGTTGGACTGGGAACTTTATCGGTTAACATTGCCGAAGAAAGAGAAACAG
TTGAGGACATGTATGAGCCTTACTTAATTCAAAAAGGCTTTATTATGCGGACTCGAACCGGGCGCGTGGCTACTGATAAA
GCCTATCAGCATCTGGGTTACCCTCTACCAAGTGATACCCCTTAG

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	89.602	97.904	0.877
ruvB	Streptococcus pneumoniae R6	89.297	97.904	0.874
ruvB	Streptococcus pneumoniae D39	89.297	97.904	0.874
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.061	98.204	0.59
ruvB	Helicobacter pylori 26695	50.307	97.605	0.491
ruvB	Synechocystis sp. PCC 6803	49.057	95.21	0.467