Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C380_RS01320 Genome accession   NC_018708
Coordinates   300209..301750 (-) Length   513 a.a.
NCBI ID   WP_015012092.1    Uniprot ID   K0HTM6
Organism   Acidovorax sp. KKS102     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 295209..306750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C380_RS01305 (C380_01340) - 295223..297187 (-) 1965 WP_043565047.1 EAL domain-containing protein -
  C380_RS01310 (C380_01345) - 297240..297929 (-) 690 WP_015012090.1 transglutaminase-like cysteine peptidase -
  C380_RS01315 (C380_01350) - 298117..300012 (+) 1896 WP_369750478.1 TolC family outer membrane protein -
  C380_RS01320 (C380_01355) comM 300209..301750 (-) 1542 WP_015012092.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C380_RS01325 (C380_01360) - 301965..302675 (+) 711 WP_015012093.1 TorF family putative porin -
  C380_RS01330 (C380_01365) glnK 302719..303057 (+) 339 WP_015012094.1 P-II family nitrogen regulator -
  C380_RS01335 (C380_01370) - 303094..304536 (+) 1443 WP_015012095.1 ammonium transporter -
  C380_RS01340 (C380_01375) glcE 304799..305926 (+) 1128 WP_043565908.1 glycolate oxidase subunit GlcE -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 53536.21 Da        Isoelectric Point: 7.8300

>NTDB_id=53887 C380_RS01320 WP_015012092.1 300209..301750(-) (comM) [Acidovorax sp. KKS102]
MSLALVQSRALLGLQAPAVTVEVHLANGLPSFTLVGLAEVEVKEARERVRSALQNAGLEFPTNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQVDASRLAGYEFAGELSLSGELRPVRGALATSLALQTQQIDAQLVLPPGSAEEAALVPAARVVRA
RHLLDVVRAFLPPGSTAGGDADVANDGWTRLQATALAASTTGPDMADVKGQAGAKRALEIAAAGGHSVLMAGPPGSGKSM
LAQRFAGLLPAMTVDEALESAAIASLAGRFRPEAFGVRPTGQPHHTASAVALVGGGSPPRPGEISLAHQGVLFLDELPEF
PRAALEALREPLETGHITIARAAQRAEFPARFQMIAAMNPCPCGFLGSTQRACRCTPDQVHRYQAKLSGPLLDRIDLHVE
VPALPAEQLVQAAAGESTASIRARVEQARALALARQGCTNQALQGQAIDAHLHLDDAAAKFLNTAAARLGWSARSTHRAL
KVARTIADLAGAPATEVSHVAEAVQYRRVLRSW

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=53887 C380_RS01320 WP_015012092.1 300209..301750(-) (comM) [Acidovorax sp. KKS102]
ATGAGTCTTGCTTTGGTGCAAAGCCGCGCCCTTCTGGGGCTGCAGGCGCCTGCAGTCACCGTCGAAGTGCATCTGGCCAA
CGGTTTGCCCAGCTTCACCCTGGTCGGGCTGGCCGAGGTGGAGGTGAAAGAAGCCCGCGAGCGTGTGCGCTCGGCACTGC
AGAACGCGGGGCTGGAGTTCCCGACCAATAAGCGCATTACCGTCAACCTGGCCCCCGCCGATCTGCCCAAGGACTCGGGT
CGCTTTGACCTGCCCATCGCCCTGGGCATCCTCGCCGCCAGCGGGCAGGTGGACGCCAGCCGCCTGGCGGGCTACGAGTT
TGCGGGCGAGCTGTCGCTGTCGGGCGAGTTGCGCCCCGTGCGCGGCGCGCTGGCCACCAGCTTGGCGCTGCAGACGCAGC
AGATCGATGCCCAGCTGGTGCTGCCCCCCGGCAGCGCCGAAGAAGCCGCCCTGGTGCCCGCCGCGCGCGTGGTGCGCGCC
CGCCACCTGCTGGACGTGGTACGGGCGTTCCTGCCACCCGGCAGCACGGCCGGTGGCGATGCCGACGTGGCCAACGACGG
CTGGACCCGCCTGCAGGCCACCGCGCTCGCCGCCAGCACCACCGGGCCCGACATGGCCGATGTGAAGGGCCAGGCGGGTG
CCAAGCGCGCGCTGGAGATTGCAGCGGCCGGGGGCCACAGCGTTTTGATGGCCGGGCCACCCGGCTCGGGCAAGTCGATG
CTGGCGCAGCGTTTTGCCGGGCTGCTGCCCGCGATGACGGTGGACGAAGCGCTGGAGAGCGCCGCCATTGCCAGCCTGGC
AGGCCGCTTCAGGCCCGAGGCGTTTGGCGTGCGCCCCACGGGCCAGCCCCACCACACGGCCAGCGCGGTGGCGCTGGTGG
GCGGTGGCTCGCCCCCCCGGCCGGGCGAGATTTCGCTGGCCCACCAGGGCGTGCTCTTCCTCGATGAACTGCCCGAATTC
CCGCGCGCTGCGCTGGAGGCGCTGCGCGAGCCGCTGGAGACCGGCCACATCACCATCGCCCGGGCGGCGCAACGCGCGGA
GTTTCCGGCCCGGTTCCAGATGATTGCGGCGATGAATCCGTGCCCCTGCGGCTTTCTGGGGTCCACCCAGCGCGCCTGCC
GCTGCACGCCTGACCAGGTGCACCGCTACCAGGCCAAGCTCAGCGGCCCGCTGCTGGACCGCATCGACCTGCATGTGGAG
GTGCCCGCCCTGCCCGCCGAGCAACTGGTGCAGGCGGCTGCGGGCGAGTCCACCGCCAGCATCCGCGCCCGGGTGGAGCA
GGCCCGCGCCCTGGCCCTGGCGCGCCAGGGCTGCACCAACCAGGCGCTGCAGGGCCAGGCCATCGACGCCCACCTGCACC
TGGATGATGCGGCTGCCAAGTTCCTCAACACCGCTGCCGCACGCCTGGGCTGGTCGGCCCGCAGCACGCACCGGGCGCTG
AAGGTGGCGCGCACCATCGCCGACCTGGCGGGCGCGCCCGCCACCGAGGTCAGCCATGTGGCCGAGGCCGTGCAATACCG
CCGCGTGCTGCGTTCCTGGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(415-507)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(204-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0HTM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.272

99.61

0.511
  comM Haemophilus influenzae Rd KW20

50.386

100

0.509
  comM Vibrio campbellii strain DS40M4

50.485

100

0.507
  comM Glaesserella parasuis strain SC1401

50.588

99.415

0.503
  comM Legionella pneumophila str. Paris

48.462

100

0.491
  comM Legionella pneumophila strain ERS1305867

48.462

100

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.586

100

0.419

Multiple sequence alignment