Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AXY_RS12040 Genome accession   NC_018704
Coordinates   2555563..2556054 (-) Length   163 a.a.
NCBI ID   WP_015011106.1    Uniprot ID   K0J855
Organism   Amphibacillus xylanus NBRC 15112     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2550563..2561054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXY_RS12020 (AXY_23920) serA 2550754..2552340 (-) 1587 WP_015011102.1 phosphoglycerate dehydrogenase -
  AXY_RS12025 (AXY_23930) - 2552815..2553807 (-) 993 WP_015011103.1 RnfABCDGE type electron transport complex subunit D -
  AXY_RS12030 (AXY_23940) rsxC 2553807..2555126 (-) 1320 WP_015011104.1 electron transport complex subunit RsxC -
  AXY_RS12035 (AXY_23950) rpsR 2555309..2555542 (-) 234 WP_015011105.1 30S ribosomal protein S18 -
  AXY_RS12040 (AXY_23960) ssbA 2555563..2556054 (-) 492 WP_015011106.1 single-stranded DNA-binding protein Machinery gene
  AXY_RS12045 (AXY_23970) rpsF 2556073..2556360 (-) 288 WP_015011107.1 30S ribosomal protein S6 -
  AXY_RS12050 (AXY_23980) ychF 2556498..2557598 (-) 1101 WP_015011108.1 redox-regulated ATPase YchF -
  AXY_RS12055 (AXY_23990) - 2557805..2558002 (-) 198 WP_015011109.1 DUF951 domain-containing protein -
  AXY_RS12060 (AXY_24000) - 2558041..2559051 (-) 1011 WP_015011110.1 hypothetical protein -
  AXY_RS12065 (AXY_24010) yyaC 2559130..2559720 (+) 591 WP_015011111.1 spore protease YyaC -
  AXY_RS12070 (AXY_24020) - 2559834..2560676 (-) 843 WP_015011112.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18071.78 Da        Isoelectric Point: 4.5993

>NTDB_id=53835 AXY_RS12040 WP_015011106.1 2555563..2556054(-) (ssbA) [Amphibacillus xylanus NBRC 15112]
MLNRVVLVGRLTKDPDLRYTANGTAVANFTVAVNRPFTNQQGDREADFINCVIWRKPAENLANYMGKGSLIGVDGRIQTR
SYDGQDGKRVYVTEVVADTVQFLESRNSNRGTSAGSGEQGSGSNPFEQHQNQQQMPSQNQFNQQSNVSENLEPIDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=53835 AXY_RS12040 WP_015011106.1 2555563..2556054(-) (ssbA) [Amphibacillus xylanus NBRC 15112]
ATGTTAAATCGTGTCGTATTAGTTGGCAGATTAACGAAGGATCCGGACTTGCGCTATACTGCAAATGGAACTGCAGTAGC
TAATTTTACTGTAGCCGTAAACAGACCATTTACAAACCAACAAGGAGATCGAGAAGCAGATTTTATTAACTGTGTCATTT
GGAGAAAACCAGCAGAAAACTTGGCAAACTACATGGGTAAGGGAAGCCTCATCGGTGTAGATGGTCGAATCCAAACAAGA
TCTTATGATGGACAAGATGGCAAGAGGGTTTACGTTACAGAAGTTGTAGCTGATACTGTTCAATTTTTAGAAAGTAGAAA
TAGTAACAGAGGAACTTCTGCGGGCAGTGGTGAACAAGGGTCTGGAAGTAATCCATTTGAGCAACACCAGAACCAACAGC
AAATGCCAAGTCAGAATCAATTCAATCAGCAAAGCAATGTAAGTGAAAACTTAGAACCAATTGATATATCAGATGATGAT
CTACCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0J855

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.538

100

0.632
  ssb Latilactobacillus sakei subsp. sakei 23K

55.747

100

0.595
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

65.031

0.417
  ssb Glaesserella parasuis strain SC1401

35

100

0.387
  ssb Vibrio cholerae strain A1552

34.831

100

0.38

Multiple sequence alignment