Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | AXY_RS01070 | Genome accession | NC_018704 |
| Coordinates | 196707..197162 (+) | Length | 151 a.a. |
| NCBI ID | WP_015008932.1 | Uniprot ID | K0J1F5 |
| Organism | Amphibacillus xylanus NBRC 15112 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 191707..202162
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AXY_RS13055 | - | 191867..191998 (+) | 132 | WP_269447584.1 | hypothetical protein | - |
| AXY_RS01025 (AXY_01840) | - | 191981..192310 (-) | 330 | WP_041450062.1 | hypothetical protein | - |
| AXY_RS01030 (AXY_01850) | - | 192374..192556 (+) | 183 | WP_015008923.1 | helix-turn-helix transcriptional regulator | - |
| AXY_RS01035 (AXY_01860) | - | 192570..192764 (+) | 195 | WP_015008924.1 | hypothetical protein | - |
| AXY_RS01040 (AXY_01870) | - | 192826..193152 (+) | 327 | WP_015008925.1 | hypothetical protein | - |
| AXY_RS01045 (AXY_01880) | - | 193244..194041 (+) | 798 | WP_015008926.1 | hypothetical protein | - |
| AXY_RS01050 (AXY_01890) | - | 194042..194302 (+) | 261 | WP_015008927.1 | hypothetical protein | - |
| AXY_RS12700 (AXY_01900) | - | 194310..194471 (+) | 162 | WP_015008928.1 | hypothetical protein | - |
| AXY_RS01055 (AXY_01910) | - | 194458..195210 (+) | 753 | WP_015008929.1 | phage antirepressor KilAC domain-containing protein | - |
| AXY_RS12160 (AXY_01920) | - | 195284..196333 (+) | 1050 | WP_015008930.1 | DnaD domain protein | - |
| AXY_RS01065 (AXY_01930) | - | 196326..196688 (+) | 363 | WP_231841358.1 | HNH endonuclease | - |
| AXY_RS01070 (AXY_01940) | ssbA | 196707..197162 (+) | 456 | WP_015008932.1 | single-stranded DNA-binding protein | Machinery gene |
| AXY_RS01075 (AXY_01950) | - | 197172..197441 (+) | 270 | WP_015008933.1 | hypothetical protein | - |
| AXY_RS01080 (AXY_01960) | - | 197883..198188 (+) | 306 | WP_015008934.1 | hypothetical protein | - |
| AXY_RS01085 (AXY_01970) | - | 198239..198760 (+) | 522 | Protein_196 | hypothetical protein | - |
| AXY_RS01090 (AXY_01980) | - | 198970..199308 (+) | 339 | WP_015008936.1 | MazG-like family protein | - |
| AXY_RS01095 (AXY_01990) | - | 199324..199737 (+) | 414 | WP_015008937.1 | hypothetical protein | - |
| AXY_RS01100 (AXY_02000) | - | 199794..200234 (+) | 441 | WP_015008938.1 | hypothetical protein | - |
| AXY_RS01105 (AXY_02010) | - | 200869..201087 (+) | 219 | WP_015008939.1 | hypothetical protein | - |
| AXY_RS01110 (AXY_02020) | - | 201199..202029 (+) | 831 | WP_172634997.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 151 a.a. Molecular weight: 16922.72 Da Isoelectric Point: 4.9205
>NTDB_id=53808 AXY_RS01070 WP_015008932.1 196707..197162(+) (ssbA) [Amphibacillus xylanus NBRC 15112]
MLNRVVLVGRLTRDPDLRYTASGRAVANFTIAVNRPFTNQQGDKEADFINCVIWNKPAENLANYMSKGNLIGIDGNLQSR
SYDGQDGKRVFVTEVVAGSVQFLESKNKTASNQNNNQVMKQTQNNANENDAAFQYHEHIEPIDISDDELPF
MLNRVVLVGRLTRDPDLRYTASGRAVANFTIAVNRPFTNQQGDKEADFINCVIWNKPAENLANYMSKGNLIGIDGNLQSR
SYDGQDGKRVFVTEVVAGSVQFLESKNKTASNQNNNQVMKQTQNNANENDAAFQYHEHIEPIDISDDELPF
Nucleotide
Download Length: 456 bp
>NTDB_id=53808 AXY_RS01070 WP_015008932.1 196707..197162(+) (ssbA) [Amphibacillus xylanus NBRC 15112]
ATGTTAAACAGAGTTGTACTTGTAGGACGATTAACAAGAGATCCAGATCTAAGGTATACAGCCAGTGGTAGAGCTGTTGC
AAACTTTACTATCGCGGTAAATAGGCCATTTACTAACCAACAAGGAGATAAAGAAGCTGATTTTATAAATTGTGTCATCT
GGAATAAGCCAGCTGAAAACTTAGCTAATTACATGAGTAAGGGAAATTTGATCGGTATTGATGGCAATTTGCAATCAAGA
AGTTATGACGGACAAGACGGAAAACGAGTTTTTGTAACTGAAGTAGTAGCAGGATCAGTTCAATTTTTAGAATCAAAGAA
TAAAACTGCTAGTAATCAAAACAATAACCAAGTCATGAAGCAAACGCAAAATAACGCAAATGAAAACGATGCAGCGTTTC
AATACCACGAACATATTGAACCGATTGATATTTCAGATGATGAGTTGCCTTTTTGA
ATGTTAAACAGAGTTGTACTTGTAGGACGATTAACAAGAGATCCAGATCTAAGGTATACAGCCAGTGGTAGAGCTGTTGC
AAACTTTACTATCGCGGTAAATAGGCCATTTACTAACCAACAAGGAGATAAAGAAGCTGATTTTATAAATTGTGTCATCT
GGAATAAGCCAGCTGAAAACTTAGCTAATTACATGAGTAAGGGAAATTTGATCGGTATTGATGGCAATTTGCAATCAAGA
AGTTATGACGGACAAGACGGAAAACGAGTTTTTGTAACTGAAGTAGTAGCAGGATCAGTTCAATTTTTAGAATCAAAGAA
TAAAACTGCTAGTAATCAAAACAATAACCAAGTCATGAAGCAAACGCAAAATAACGCAAATGAAAACGATGCAGCGTTTC
AATACCACGAACATATTGAACCGATTGATATTTCAGATGATGAGTTGCCTTTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
51.685 |
100 |
0.609 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.941 |
100 |
0.596 |
| ssbA | Streptococcus mutans UA159 |
41.06 |
100 |
0.411 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
54.63 |
71.523 |
0.391 |
| ssb | Vibrio cholerae strain A1552 |
31.818 |
100 |
0.371 |