Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/celB   Type   Machinery gene
Locus tag   SPB_RS04590 Genome accession   NZ_AEUT02000001
Coordinates   913471..915705 (-) Length   744 a.a.
NCBI ID   WP_254655067.1    Uniprot ID   -
Organism   Streptococcus parauberis NCFD 2020     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 908471..920705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS04570 (SPB_0945) queA 909346..910374 (+) 1029 WP_003104379.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SPB_RS04575 (SPB_0946) - 910423..911541 (-) 1119 WP_003105674.1 serine hydrolase -
  SPB_RS04580 (SPB_0947) sodA 911678..912286 (-) 609 WP_003102930.1 superoxide dismutase SodA -
  SPB_RS04585 (SPB_0948) holA 912396..913424 (-) 1029 WP_003104123.1 DNA polymerase III subunit delta -
  SPB_RS04590 (SPB_0949) comEC/celB 913471..915705 (-) 2235 WP_254655067.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SPB_RS04595 (SPB_0950) comEA 915698..916375 (-) 678 WP_003106056.1 helix-hairpin-helix domain-containing protein Machinery gene
  SPB_RS04600 (SPB_0951) - 916435..917175 (-) 741 WP_003103832.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  SPB_RS04605 (SPB_0952) - 917315..918085 (+) 771 WP_003104782.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  SPB_RS04610 (SPB_0953) - 918075..918359 (+) 285 WP_003102955.1 GIY-YIG nuclease family protein -
  SPB_RS04615 (SPB_0954) - 918373..920370 (-) 1998 WP_003103019.1 KUP/HAK/KT family potassium transporter -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 86123.18 Da        Isoelectric Point: 9.8565

>NTDB_id=53806 SPB_RS04590 WP_254655067.1 913471..915705(-) (comEC/celB) [Streptococcus parauberis NCFD 2020]
MNKYLPIPVAQLALITIMMFYSINCRSHLAVLLFICLLILLINNYGKIVFVKVCLVLTFFAFYFLVNSHISAYKFKHQPK
VIYHIRLIPDSININGDLLSFEGEENENRYQIFYQLKTKEEFLFYRNCSDYLDIETEIKLEHADGQRNFNGFNYQKHLKN
HGIFRIGRLKDIKKMRISKVRNLFEHLVKWRRLAIVTCQQTYPDPMAHYMTGLLFGFLDKSFGQMTDIYSQLGIIHLFAL
SGMHVGFFFNNFRKVLIKISIPQEYFPGIELLFSIFYAAITGYSISVLRSLSQRNLSNLKVSKEDNIAFTVFILFVFSPN
FLLTVGGVLSLAYAFVISILNNRYHHHKCRQFIFPLSIACAGLPFLTFYFSVYHPISILLTALFSLLFDQLILPLLTVVY
FLTPILPLRTLNGIFESMEVVVRWLCEKFGHAWIIGKPNQIQLFLILALLVILYDFWNRKNVRYLLIFLLSLVWFSIAQP
FKNEITIVDVGQGDSILIRDIFNKTILIDVGGVHKQQGKIEWQRRHNLSNAEKTLIPYLKSQGINKIDQLLLTHTDTDHV
GDMEDVVKSINIKEILVSQGSLTNQEFVDRLYKMKRKVKVIKRGDVLPVMGSQLRVLYPFKKGDGKNNDSIVLYGKLLNK
RFLFTGDLEADGEKEILGNYPDLKADILKAGHHGSKGSSIEEFIDQLSPQIALFSAGKNNIYKHPHQETISRFHRRKINT
LRTDQNGAIRFKGLFKWTIECVNP

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=53806 SPB_RS04590 WP_254655067.1 913471..915705(-) (comEC/celB) [Streptococcus parauberis NCFD 2020]
TTGAATAAATACTTGCCGATTCCAGTTGCTCAGTTAGCTTTGATAACAATAATGATGTTTTACTCAATTAATTGTAGAAG
TCATTTAGCAGTACTGCTTTTTATTTGTCTTTTAATATTACTAATCAACAATTATGGGAAAATAGTTTTTGTTAAAGTTT
GTTTAGTTCTTACATTTTTTGCTTTCTACTTTCTTGTCAATTCTCACATTTCCGCCTACAAATTTAAGCATCAACCCAAA
GTTATTTACCATATTCGGTTAATTCCTGATTCAATTAATATTAATGGAGACCTTTTATCTTTTGAAGGTGAAGAAAATGA
AAATCGATATCAAATCTTTTATCAGCTGAAAACGAAAGAGGAATTCTTATTTTATCGCAATTGCAGTGATTATCTTGATA
TTGAAACGGAAATAAAATTAGAGCATGCTGATGGACAAAGAAATTTCAATGGATTTAACTATCAGAAGCACTTAAAAAAT
CATGGAATTTTTCGAATTGGTCGACTTAAAGATATTAAGAAAATGCGTATTTCAAAGGTCCGAAATCTATTTGAACACTT
GGTGAAATGGCGAAGACTGGCTATTGTTACCTGTCAGCAGACTTATCCGGATCCAATGGCTCATTATATGACTGGCTTGC
TATTCGGATTTTTAGATAAAAGTTTTGGACAGATGACAGATATATATAGTCAGCTAGGAATTATTCATCTCTTTGCCTTG
TCAGGGATGCATGTTGGATTTTTCTTTAATAATTTTCGAAAAGTCTTAATCAAGATATCAATTCCACAAGAGTACTTCCC
AGGAATTGAATTGCTCTTTTCAATTTTTTATGCTGCAATAACTGGCTATAGTATTTCTGTTTTAAGGAGTTTATCTCAAA
GGAATCTAAGTAACTTAAAGGTTAGTAAGGAAGATAATATTGCATTTACAGTTTTTATACTTTTTGTCTTTTCTCCTAAT
TTTCTCTTAACTGTAGGAGGGGTACTGTCCTTAGCTTATGCATTTGTTATATCGATTTTGAACAATCGATATCATCATCA
CAAGTGTCGACAATTTATTTTCCCTCTTTCAATTGCATGTGCCGGTTTGCCATTCTTGACTTTTTACTTTTCGGTTTACC
ATCCAATATCTATTCTCTTAACCGCATTATTTTCCTTGCTATTTGATCAGCTCATTTTGCCGCTTTTAACAGTTGTTTAT
TTTTTGACTCCTATTTTACCTTTACGTACCTTGAACGGCATTTTTGAATCGATGGAAGTGGTTGTTCGCTGGTTATGTGA
AAAATTTGGTCATGCATGGATTATTGGAAAACCAAATCAAATTCAACTTTTCCTAATTTTGGCTTTGCTAGTTATTTTAT
ATGATTTTTGGAATAGGAAAAATGTGAGGTATCTCCTTATTTTTCTTCTTAGTCTTGTTTGGTTTTCAATTGCTCAGCCA
TTCAAAAATGAAATTACAATTGTTGATGTCGGACAAGGGGATAGTATATTGATTAGGGATATCTTTAACAAAACTATCTT
AATTGACGTTGGAGGAGTCCATAAACAACAAGGAAAAATAGAATGGCAAAGAAGACATAATCTTTCTAATGCGGAGAAAA
CATTAATTCCATATTTGAAAAGTCAGGGTATTAACAAGATCGATCAACTATTACTAACGCATACGGATACAGACCATGTT
GGTGATATGGAGGATGTTGTGAAATCAATTAATATTAAGGAAATATTGGTTAGTCAAGGTAGTTTAACGAATCAAGAGTT
TGTAGACAGGCTATATAAGATGAAAAGAAAAGTGAAAGTGATTAAAAGAGGAGATGTTTTACCTGTTATGGGGAGTCAGC
TTAGGGTTCTCTATCCTTTTAAAAAAGGGGATGGGAAAAATAATGATTCCATCGTATTGTATGGAAAATTGTTGAATAAG
CGATTTTTATTTACTGGAGATTTAGAAGCTGATGGGGAAAAAGAAATATTGGGAAATTATCCCGATTTGAAAGCTGATAT
TTTGAAAGCTGGTCATCATGGGTCGAAGGGATCGTCTATTGAAGAATTCATTGATCAACTTTCACCACAAATAGCTTTAT
TTTCAGCTGGGAAAAACAATATTTATAAGCATCCACATCAAGAAACCATAAGTCGTTTTCATCGACGGAAAATTAATACA
TTACGGACTGACCAAAATGGAGCAATTCGATTTAAAGGTTTATTTAAGTGGACAATCGAATGCGTTAATCCTTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(489-695)

Competence protein (Competence)

(213-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

44.772

100

0.449
  comEC/celB Streptococcus mitis NCTC 12261

44.504

100

0.446
  comEC/celB Streptococcus pneumoniae TIGR4

44.28

99.866

0.442
  comEC/celB Streptococcus pneumoniae Rx1

43.607

99.866

0.435
  comEC/celB Streptococcus pneumoniae D39

43.607

99.866

0.435
  comEC/celB Streptococcus pneumoniae R6

43.607

99.866

0.435
  comEC Lactococcus lactis subsp. cremoris KW2

43.378

99.462

0.431

Multiple sequence alignment