Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AXY_RS00570 Genome accession   NC_018704
Coordinates   111806..113173 (+) Length   455 a.a.
NCBI ID   WP_015008837.1    Uniprot ID   K0IV69
Organism   Amphibacillus xylanus NBRC 15112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 106806..118173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXY_RS00550 (AXY_00940) - 107065..107526 (+) 462 WP_015008833.1 CtsR family transcriptional regulator -
  AXY_RS00555 (AXY_00950) - 107554..108102 (+) 549 WP_015008834.1 UvrB/UvrC motif-containing protein -
  AXY_RS00560 (AXY_00960) - 108102..109169 (+) 1068 WP_015008835.1 protein arginine kinase -
  AXY_RS00565 (AXY_00970) - 109187..111622 (+) 2436 WP_015008836.1 ATP-dependent Clp protease ATP-binding subunit -
  AXY_RS00570 (AXY_00980) radA 111806..113173 (+) 1368 WP_015008837.1 DNA repair protein RadA Machinery gene
  AXY_RS00575 (AXY_00990) - 113248..114357 (+) 1110 WP_015008838.1 PIN/TRAM domain-containing protein -
  AXY_RS00580 (AXY_01000) gltX 114597..116060 (+) 1464 WP_015008839.1 glutamate--tRNA ligase -
  AXY_RS00585 (AXY_01010) cysE 116381..117037 (+) 657 WP_015008840.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49913.68 Da        Isoelectric Point: 7.4026

>NTDB_id=53807 AXY_RS00570 WP_015008837.1 111806..113173(+) (radA) [Amphibacillus xylanus NBRC 15112]
MAKKKTSFVCRECGYESPKWMGKCPTCQQWNTLEEELVIKTSTKHRGLGQQSGQKPEKITAIETKEEPRMKTDMPELNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQITNQLANKGNPVLYISGEESVRQTKLRADRLDVSSDQLYVLSETNMSIISAQI
DQLNPSLVVIDSIQTVFKDEVTSAPGSVSQVRECTGELMRIAKTKHIPIFIVGHVTKEGAIAGPRMLEHMVDTVLYFEGE
RHHSYRILRGVKNRFGSTNEMGIFEMKESGLHEVLNPSEIFLEERSQGVAGSTVVASMEGTRPVLVEIQSLISPTSFGQA
RRMATGIDHNRVPLLMAVLEKRVGLLMQNQDAYVKVAGGIKLDEPAIDLAVAISIASSFKGKACSPYDVLIGEVGLTGEI
RRVSRIEQRIQEANKLGFKRVIIPARNLDGLQIPDSIEVIGVNSIQEAMKISIIE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=53807 AXY_RS00570 WP_015008837.1 111806..113173(+) (radA) [Amphibacillus xylanus NBRC 15112]
TTGGCTAAAAAGAAGACAAGCTTCGTATGTAGAGAATGTGGCTATGAGTCACCTAAGTGGATGGGAAAGTGCCCTACCTG
TCAACAGTGGAATACTTTAGAAGAAGAATTGGTCATTAAAACATCAACGAAGCATCGAGGGTTAGGACAACAAAGTGGCC
AAAAGCCAGAAAAGATAACAGCAATTGAAACTAAAGAAGAGCCTAGAATGAAAACTGATATGCCTGAGTTAAATCGAGTA
TTAGGTGGAGGTGTCGTTCCCGGTTCACTAGTTTTAATCGGTGGTGACCCAGGGATAGGAAAGTCAACGCTCCTTTTACA
GATTACAAATCAATTAGCTAATAAAGGTAATCCTGTCCTCTACATCTCTGGAGAGGAATCTGTTCGACAGACAAAATTAC
GAGCAGACCGGCTTGATGTTAGTTCAGATCAGTTATATGTGTTATCTGAAACAAACATGAGCATAATCTCAGCACAAATT
GATCAACTAAATCCCTCTTTAGTCGTAATTGACTCGATTCAAACTGTATTTAAAGATGAGGTCACAAGTGCACCTGGAAG
TGTTTCACAAGTTCGAGAGTGCACGGGTGAACTAATGCGCATAGCGAAAACAAAGCATATCCCTATTTTTATTGTTGGTC
ACGTTACGAAGGAAGGCGCAATTGCAGGACCTAGAATGCTTGAGCATATGGTAGATACAGTGCTTTACTTCGAAGGTGAA
AGACATCATAGCTATCGAATTTTACGCGGTGTAAAGAACCGATTTGGTAGTACAAATGAGATGGGTATTTTTGAAATGAA
GGAATCTGGTCTTCATGAGGTATTAAATCCATCAGAGATATTTTTAGAAGAGCGATCACAAGGTGTAGCTGGATCTACTG
TTGTTGCATCAATGGAAGGGACAAGACCTGTACTTGTTGAGATTCAGTCGTTAATTTCCCCGACCAGCTTTGGCCAAGCT
AGACGAATGGCAACTGGTATTGACCATAATCGAGTACCTCTGCTTATGGCTGTATTAGAAAAACGAGTAGGATTACTTAT
GCAAAATCAAGATGCTTACGTCAAAGTTGCTGGGGGTATTAAACTAGATGAGCCAGCAATAGATTTAGCAGTAGCGATTA
GTATAGCATCAAGCTTTAAAGGTAAGGCATGTTCACCTTATGATGTATTAATTGGAGAGGTTGGCTTAACTGGTGAGATA
CGTCGTGTGTCTCGAATTGAACAACGTATCCAAGAGGCAAATAAATTAGGATTTAAACGAGTGATTATCCCAGCCCGAAA
TTTAGATGGTCTACAAATACCAGATTCTATAGAGGTCATCGGTGTTAACTCTATTCAAGAAGCAATGAAAATTTCAATTA
TAGAATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(348-427)

AAA domain (AAA_25)

(69-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0IV69

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.026

100

0.732
  radA Streptococcus pneumoniae Rx1

60.889

98.901

0.602
  radA Streptococcus pneumoniae D39

60.889

98.901

0.602
  radA Streptococcus pneumoniae R6

60.889

98.901

0.602
  radA Streptococcus pneumoniae TIGR4

60.889

98.901

0.602
  radA Streptococcus mitis SK321

60.889

98.901

0.602
  radA Streptococcus mitis NCTC 12261

60.667

98.901

0.6

Multiple sequence alignment