Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SPB_RS04595 Genome accession   NZ_AEUT02000001
Coordinates   915698..916375 (-) Length   225 a.a.
NCBI ID   WP_003106056.1    Uniprot ID   -
Organism   Streptococcus parauberis NCFD 2020     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 910698..921375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS04580 (SPB_0947) sodA 911678..912286 (-) 609 WP_003102930.1 superoxide dismutase SodA -
  SPB_RS04585 (SPB_0948) holA 912396..913424 (-) 1029 WP_003104123.1 DNA polymerase III subunit delta -
  SPB_RS04590 (SPB_0949) comEC/celB 913471..915705 (-) 2235 WP_254655067.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SPB_RS04595 (SPB_0950) comEA 915698..916375 (-) 678 WP_003106056.1 helix-hairpin-helix domain-containing protein Machinery gene
  SPB_RS04600 (SPB_0951) - 916435..917175 (-) 741 WP_003103832.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  SPB_RS04605 (SPB_0952) - 917315..918085 (+) 771 WP_003104782.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  SPB_RS04610 (SPB_0953) - 918075..918359 (+) 285 WP_003102955.1 GIY-YIG nuclease family protein -
  SPB_RS04615 (SPB_0954) - 918373..920370 (-) 1998 WP_003103019.1 KUP/HAK/KT family potassium transporter -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24874.51 Da        Isoelectric Point: 5.0449

>NTDB_id=53807 SPB_RS04595 WP_003106056.1 915698..916375(-) (comEA) [Streptococcus parauberis NCFD 2020]
MKEILTDIKQWYVNHYILGRIIAIIVCICLLFSLSLFVFGNSTADKQKEEDMIELRKEIIEVKEDKEQSQAESKSTDTSN
QIMVDLKGAVKQEGVYKLPADSRVTDLVKMAGGLTQDADRQAINLAQKLSDASVIYIARLGENKSVLPSSTVQAADAPSD
DEKININSATSDQLTKIPGIGEKRAHEIIEARDKMGGFKSLEDLTKISGIGKKTLEKMKDNLSIE

Nucleotide


Download         Length: 678 bp        

>NTDB_id=53807 SPB_RS04595 WP_003106056.1 915698..916375(-) (comEA) [Streptococcus parauberis NCFD 2020]
ATGAAAGAAATTCTAACAGATATAAAACAGTGGTATGTTAATCACTATATTCTAGGCAGAATCATCGCAATTATTGTTTG
TATTTGTCTTCTTTTTTCTCTATCTCTTTTTGTTTTTGGGAATAGCACAGCCGATAAACAAAAAGAAGAAGACATGATTG
AATTAAGAAAAGAAATTATAGAAGTTAAAGAAGACAAGGAGCAGAGCCAAGCAGAATCAAAGTCGACTGATACAAGTAAC
CAAATTATGGTTGATTTGAAAGGGGCTGTTAAGCAAGAGGGGGTCTATAAGTTACCAGCAGATAGTCGAGTGACTGATTT
GGTCAAAATGGCCGGTGGGCTGACTCAAGATGCTGACAGGCAAGCCATCAATCTCGCTCAAAAATTATCCGATGCATCTG
TTATTTATATTGCTAGATTGGGTGAGAATAAATCAGTTTTACCCTCATCGACAGTCCAAGCTGCAGACGCACCTAGTGAT
GATGAAAAGATTAATATAAATAGTGCGACAAGTGATCAACTAACTAAAATTCCAGGGATTGGCGAAAAACGAGCGCATGA
AATTATCGAAGCTAGAGATAAAATGGGTGGCTTCAAAAGTCTGGAAGATTTAACCAAAATTTCTGGCATTGGTAAGAAAA
CACTTGAAAAAATGAAAGATAATTTAAGTATTGAATAA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(83-137)

Helix-hairpin-helix motif (HHH_3)

(162-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

39.744

100

0.413
  comEA Lactococcus lactis subsp. cremoris KW2

37.391

100

0.382
  comEA/celA/cilE Streptococcus mitis NCTC 12261

35.47

100

0.369
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

35.652

100

0.364
  comEA/celA/cilE Streptococcus mitis SK321

35.652

100

0.364

Multiple sequence alignment