Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q91_RS01155 Genome accession   NC_018697
Coordinates   235208..235672 (+) Length   154 a.a.
NCBI ID   WP_015005043.1    Uniprot ID   -
Organism   Cycloclasticus sp. P1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 230208..240672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q91_RS01145 (Q91_0229) uvrA 230851..233691 (-) 2841 WP_015005041.1 excinuclease ABC subunit UvrA -
  Q91_RS01150 (Q91_0230) - 233760..235157 (+) 1398 WP_015005042.1 MFS transporter -
  Q91_RS01155 (Q91_0231) ssb 235208..235672 (+) 465 WP_015005043.1 single-stranded DNA-binding protein Machinery gene
  Q91_RS01160 (Q91_0232) - 235864..236667 (-) 804 WP_015005044.1 SDR family oxidoreductase -
  Q91_RS01165 (Q91_0233) - 237048..237464 (-) 417 WP_015005045.1 hypothetical protein -
  Q91_RS01170 (Q91_0234) - 237616..238104 (+) 489 WP_015005046.1 hypothetical protein -
  Q91_RS01175 (Q91_0235) - 238097..238702 (+) 606 WP_238538344.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16747.67 Da        Isoelectric Point: 5.2707

>NTDB_id=53778 Q91_RS01155 WP_015005043.1 235208..235672(+) (ssb) [Cycloclasticus sp. P1]
MASRGVNKVILVGNLGKDPEIRYMPSGGAVANVTVATSESWKDKNTGEQKEQTEWHRVVFFNRLAEVVGEYLKKGSKIYV
EGALQTRKWQDQSGQDRYTTEIKASTMQMLDSRGGGSAEFSPAGAAPASKPSNFASAPAQPTAPMDDFDDDIPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=53778 Q91_RS01155 WP_015005043.1 235208..235672(+) (ssb) [Cycloclasticus sp. P1]
ATGGCAAGCAGAGGCGTAAATAAAGTAATTTTGGTGGGTAACTTGGGTAAAGACCCTGAGATTCGTTATATGCCGAGTGG
TGGTGCGGTAGCCAATGTTACCGTGGCAACATCAGAATCATGGAAAGATAAAAATACAGGTGAACAAAAAGAACAAACAG
AGTGGCATAGAGTAGTGTTTTTTAATCGTTTAGCTGAGGTGGTTGGTGAGTACCTTAAGAAGGGCTCAAAAATTTATGTA
GAAGGTGCTTTGCAAACACGTAAATGGCAAGATCAAAGCGGACAAGACCGTTACACTACAGAAATTAAAGCCAGCACAAT
GCAAATGTTGGACAGCCGAGGCGGTGGTTCGGCTGAATTTTCGCCAGCAGGTGCAGCGCCGGCCTCGAAACCGAGTAATT
TTGCATCAGCACCGGCACAACCTACAGCACCGATGGATGATTTTGATGATGACATTCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.757

100

0.675
  ssb Glaesserella parasuis strain SC1401

57.303

100

0.662
  ssb Neisseria meningitidis MC58

45.087

100

0.506
  ssb Neisseria gonorrhoeae MS11

45.087

100

0.506
  ssbA Bacillus subtilis subsp. subtilis str. 168

34.483

100

0.39

Multiple sequence alignment