Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   B5T_RS20800 Genome accession   NC_018691
Coordinates   4640427..4641914 (+) Length   495 a.a.
NCBI ID   WP_014996499.1    Uniprot ID   K0CIH0
Organism   Alloalcanivorax dieselolei B5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4635427..4646914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5T_RS20780 (B5T_04184) glnK 4636503..4636841 (-) 339 WP_014996495.1 P-II family nitrogen regulator -
  B5T_RS20785 (B5T_04185) - 4637151..4637408 (+) 258 WP_014996496.1 accessory factor UbiK family protein -
  B5T_RS20790 (B5T_04186) - 4637412..4639322 (-) 1911 WP_014996497.1 alkyl/aryl-sulfatase -
  B5T_RS20795 (B5T_04187) - 4639423..4640322 (+) 900 WP_014996498.1 LysR family transcriptional regulator -
  B5T_RS20800 (B5T_04188) comM 4640427..4641914 (+) 1488 WP_014996499.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  B5T_RS20805 (B5T_04189) - 4641886..4642794 (-) 909 WP_014996500.1 DMT family transporter -
  B5T_RS20810 (B5T_04190) - 4642887..4643687 (+) 801 WP_014996501.1 helix-turn-helix domain-containing protein -
  B5T_RS20815 (B5T_04191) - 4643690..4644436 (-) 747 WP_014996502.1 SDR family NAD(P)-dependent oxidoreductase -
  B5T_RS20820 (B5T_04192) - 4644618..4645652 (-) 1035 WP_014996503.1 AraC family transcriptional regulator -
  B5T_RS20825 (B5T_04193) - 4645762..4646535 (-) 774 WP_014996504.1 pseudouridine synthase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 53147.88 Da        Isoelectric Point: 7.8944

>NTDB_id=53759 B5T_RS20800 WP_014996499.1 4640427..4641914(+) (comM) [Alloalcanivorax dieselolei B5]
MNITSLLSRASQGIDAVPVTVETHLAPGLPGFTIVGLPDTAVRESRDRVRSALVTSGFEFPQRRITVNLAPADLPKDGGR
FDLPIALGILLASGQLGRVDIDGHEFIGELALSGRLNPVPALLPAALACADAGHTLVVPAENADEAALAGAHTLAVTCLN
DLCAHLRGATPLPCHPAPDIDRQAAPHHPCLADVRGQISGKRVLEIAAAGGHSLLLCGPPGAGKSLLASRLPGLLPPLDQ
AQALEVAAVYSLRASRPAAHFLQRPYRSPHHTTSATALVGGGGRPRPGEISLAHHGVLFLDELPEFERRVLEVLREPLET
GEVHIARTAQQLTFPARFQLVAAMNPCPCGYLGDPERGCGYRCEKARRYQARLSGPLLDRIDLHLDLPPLPAAELLAGQP
GESSERVRQRVIAARQRQQQRQNRLNRDLPTDTLEAILAPHRAWLIETMERLGLSARALHRSLRVARTIADLAGTDRVDR
AHLSEALSYRRNQEG

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=53759 B5T_RS20800 WP_014996499.1 4640427..4641914(+) (comM) [Alloalcanivorax dieselolei B5]
ATGAACATTACCAGCCTGCTCAGCCGCGCCAGTCAGGGTATCGATGCCGTTCCGGTAACGGTGGAAACCCATCTGGCACC
GGGATTGCCCGGTTTCACCATCGTCGGCCTGCCGGACACCGCGGTACGCGAGAGCCGCGACCGGGTCCGCTCGGCGCTGG
TCACCAGCGGCTTCGAGTTTCCGCAACGGCGCATCACCGTCAATCTGGCACCGGCGGACCTGCCCAAGGACGGCGGCCGT
TTCGATTTGCCCATCGCCCTGGGCATCCTGTTGGCCAGCGGCCAGTTGGGGCGGGTGGACATCGACGGCCACGAATTCAT
TGGCGAGCTGGCGCTGTCCGGCCGTCTCAATCCGGTGCCGGCGCTGTTGCCCGCCGCGCTGGCCTGCGCCGACGCTGGCC
ATACCCTGGTGGTGCCGGCGGAGAATGCCGACGAGGCGGCCCTGGCCGGCGCCCACACCCTGGCGGTGACCTGCCTCAAT
GATCTCTGCGCCCATCTGCGCGGCGCCACGCCCTTGCCCTGCCACCCCGCCCCGGACATCGACCGGCAAGCGGCCCCGCA
CCATCCCTGCCTGGCCGATGTGCGGGGTCAGATCAGTGGCAAGCGCGTGCTGGAAATCGCCGCCGCCGGCGGCCACTCCC
TGCTGCTGTGCGGCCCTCCGGGGGCCGGCAAAAGCCTGCTGGCGTCACGACTGCCGGGCCTGCTGCCACCACTGGACCAG
GCTCAGGCCCTGGAAGTGGCGGCCGTCTACTCGCTGCGCGCCAGCCGGCCGGCGGCGCACTTTCTGCAACGCCCCTACCG
CAGCCCCCATCACACCACCTCCGCCACCGCCCTGGTGGGCGGCGGCGGCCGCCCACGGCCGGGAGAAATTTCCCTGGCCC
ATCATGGCGTGCTGTTCCTTGATGAGTTGCCGGAATTCGAACGGCGCGTGCTGGAGGTACTGCGTGAACCGCTGGAGACC
GGCGAGGTGCACATCGCCCGCACCGCCCAGCAATTGACGTTCCCCGCCCGCTTCCAGCTAGTGGCGGCGATGAACCCCTG
CCCCTGTGGCTATCTTGGCGACCCCGAGCGCGGCTGCGGCTACCGCTGTGAAAAAGCCCGCCGCTATCAGGCACGCCTGT
CCGGGCCGCTGCTGGATCGTATTGATCTGCATCTGGATCTGCCCCCACTGCCGGCGGCGGAGCTGCTGGCAGGCCAGCCC
GGGGAAAGCAGTGAACGGGTACGCCAGCGCGTGATCGCCGCCCGCCAGCGGCAACAGCAACGCCAGAACCGGCTCAACCG
GGATCTGCCCACCGATACGCTGGAAGCGATACTGGCGCCGCACCGCGCCTGGTTGATCGAGACCATGGAGCGGCTTGGCC
TGTCCGCCCGCGCGCTGCACCGTAGCCTGCGGGTGGCCCGCACCATCGCCGATCTGGCGGGCACGGACCGGGTGGACCGC
GCCCATCTGAGTGAGGCGCTCAGCTATCGGCGGAACCAGGAAGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-490)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0CIH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.475

100

0.535
  comM Vibrio campbellii strain DS40M4

51.19

100

0.521
  comM Haemophilus influenzae Rd KW20

49.203

100

0.499
  comM Legionella pneumophila str. Paris

48.703

100

0.493
  comM Legionella pneumophila strain ERS1305867

48.703

100

0.493
  comM Glaesserella parasuis strain SC1401

48.207

100

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.633

100

0.422

Multiple sequence alignment