Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   STRSA0001_RS10400 Genome accession   NZ_ACLO01000018
Coordinates   39320..39871 (+) Length   183 a.a.
NCBI ID   WP_157747901.1    Uniprot ID   -
Organism   Streptococcus salivarius SK126     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 34320..44871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRSA0001_RS01060 (STRSA0001_1746) - 34758..36179 (-) 1422 WP_002883789.1 NCS2 family permease -
  STRSA0001_RS01065 (STRSA0001_1747) - 36388..37200 (+) 813 WP_002883805.1 HAD family hydrolase -
  STRSA0001_RS01070 (STRSA0001_1748) comE/blpR 37929..38666 (+) 738 WP_002883766.1 LytR/AlgR family response regulator transcription factor Regulator
  STRSA0001_RS10400 comD/comD3 39320..39871 (+) 552 WP_157747901.1 GHKL domain-containing protein Regulator
  STRSA0001_RS01080 (STRSA0001_1750) - 40017..41084 (-) 1068 WP_002883808.1 HlyD family efflux transporter periplasmic adaptor subunit -
  STRSA0001_RS01085 (STRSA0001_1751) comA/nlmT 41102..43258 (-) 2157 WP_002883725.1 peptide cleavage/export ABC transporter Regulator
  STRSA0001_RS01090 - 43731..43952 (-) 222 WP_022495973.1 garvicin Q family class II bacteriocin -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 21281.59 Da        Isoelectric Point: 6.4922

>NTDB_id=53735 STRSA0001_RS10400 WP_157747901.1 39320..39871(+) (comD/comD3) [Streptococcus salivarius SK126]
MQEELNLQNNIRLKNLDTYNHKIEELYQTVRGFRHNYRNLLTTLKLGIDQEDMTIVKDIYTSILETSDKRLETKQFDLTQ
LINIQDNTLKSLLSAKFLQADDQNIDISLEIPSPITLEGMTILDFITVISILIDNAMEATVKAKKTKIMIAYIKQDKYQR
FIIKNSTKEESISITKIFQKGFS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=53735 STRSA0001_RS10400 WP_157747901.1 39320..39871(+) (comD/comD3) [Streptococcus salivarius SK126]
ATGCAAGAAGAACTAAATCTACAAAACAATATCAGGCTAAAAAATCTCGATACCTACAATCATAAAATTGAAGAGCTTTA
TCAAACCGTCCGTGGTTTTCGTCATAATTATAGAAACCTACTTACCACTCTGAAACTAGGCATTGATCAGGAAGACATGA
CAATAGTCAAGGATATCTACACTTCGATTTTGGAAACATCTGATAAAAGACTAGAAACCAAGCAATTTGACTTGACACAA
CTAATCAATATCCAAGATAATACTCTAAAAAGCCTCCTATCTGCCAAATTTCTCCAAGCAGATGACCAAAATATTGATAT
CTCCCTAGAAATTCCAAGTCCTATCACGTTAGAGGGAATGACTATTCTGGACTTTATCACTGTTATCTCTATACTGATAG
ACAATGCCATGGAAGCTACTGTAAAAGCTAAAAAAACTAAGATAATGATTGCTTATATTAAACAGGATAAATATCAACGC
TTCATTATCAAAAATAGTACCAAAGAAGAGAGTATCTCTATTACCAAAATCTTTCAAAAAGGTTTCTCTTAA

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(121-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

43.407

99.454

0.432
  comD/comD1 Streptococcus equinus JB1

45.614

93.443

0.426
  comD/blpH Streptococcus mutans UA159

40.437

100

0.404
  comD/comD2 Streptococcus equinus JB1

42.197

94.536

0.399

Multiple sequence alignment