Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   I6K87_RS09495 Genome accession   NZ_CP069892
Coordinates   1910549..1911475 (+) Length   308 a.a.
NCBI ID   WP_003026180.1    Uniprot ID   -
Organism   Streptococcus anginosus strain FDAARGOS_1357     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1905549..1916475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K87_RS09485 (I6K87_09485) amiA3 1906699..1908678 (+) 1980 WP_204982604.1 peptide ABC transporter substrate-binding protein Regulator
  I6K87_RS09490 (I6K87_09490) amiC 1909053..1910549 (+) 1497 WP_204982605.1 ABC transporter permease Regulator
  I6K87_RS09495 (I6K87_09495) amiD 1910549..1911475 (+) 927 WP_003026180.1 oligopeptide ABC transporter permease OppC Regulator
  I6K87_RS09500 (I6K87_09500) amiE 1911484..1912551 (+) 1068 WP_003039437.1 ABC transporter ATP-binding protein Regulator
  I6K87_RS09505 (I6K87_09505) amiF 1912562..1913485 (+) 924 WP_003026175.1 ATP-binding cassette domain-containing protein Regulator
  I6K87_RS09510 (I6K87_09510) - 1913628..1914464 (+) 837 WP_003039829.1 Cof-type HAD-IIB family hydrolase -
  I6K87_RS09515 (I6K87_09515) - 1914524..1915489 (-) 966 WP_003039503.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34488.54 Da        Isoelectric Point: 9.7392

>NTDB_id=537287 I6K87_RS09495 WP_003026180.1 1910549..1911475(+) (amiD) [Streptococcus anginosus strain FDAARGOS_1357]
MATIDKTKFQFVKRDDFASETIDAPAYSYWKSVMRQFLKKKSTVIMLGILVAIILMSFIYPIFSDFDFNDVSKVNDFGAR
YIKPNGQYWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGIVIGGIWGISKTVDRIMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMTITGWVGIAYTIRIQIMRYRDLEYNLASRTLGTPTLKIIVKNIMPQLVSVIVTTASQLLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=537287 I6K87_RS09495 WP_003026180.1 1910549..1911475(+) (amiD) [Streptococcus anginosus strain FDAARGOS_1357]
ATGGCTACAATTGATAAGACTAAGTTCCAATTTGTCAAACGCGATGATTTTGCCTCTGAAACGATTGATGCTCCAGCCTA
TTCTTACTGGAAATCAGTTATGCGTCAGTTCCTAAAAAAGAAATCAACAGTTATCATGTTGGGAATTTTGGTCGCTATTA
TTTTGATGAGTTTCATTTATCCGATTTTCTCAGATTTTGACTTTAACGATGTCAGCAAGGTGAATGATTTCGGTGCGCGT
TATATTAAACCAAATGGTCAATATTGGTTTGGTACAGATAGCAACGGGAAATCCCTTTTTGACGGAGTATGGTTTGGAGC
TCGTAACTCTATCCTCATTTCCGTCATTGCAACTGTGATTAACTTAGTTATTGGTATTGTGATTGGTGGTATCTGGGGAA
TTTCCAAAACCGTTGACCGTATCATGATGGAAGTGTACAATATCATTTCTAACATCCCATCTCTCTTGATTGTCATTGTC
TTGACTTATTCAATTGGTGCTGGTTTCTGGAACTTGATTTTTGCTATGACCATCACAGGTTGGGTTGGGATTGCTTATAC
GATTCGTATCCAAATCATGCGTTATCGCGACTTGGAATATAACCTTGCCAGCCGAACTTTGGGTACGCCAACACTGAAAA
TCATTGTAAAAAATATCATGCCACAATTGGTTTCTGTTATTGTGACCACGGCTTCACAACTGCTGCCAAGTTTCATTTCT
TATGAAGCATTTCTATCGTTCTTTGGTTTGGGGCTTCCTGTCACAGTACCAAGTTTGGGACGGTTAATTTCAGATTATTC
ACAAAACGTGACAACAAATGCGTATCTTTTCTGGATTCCATTGACAACCTTGATTTTGGTTTCCCTCTCATTATTCGTTG
TCGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

87.013

100

0.87
  amiD Streptococcus thermophilus LMG 18311

85.065

100

0.851
  amiD Streptococcus thermophilus LMD-9

85.065

100

0.851