Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   I6K87_RS09505 Genome accession   NZ_CP069892
Coordinates   1912562..1913485 (+) Length   307 a.a.
NCBI ID   WP_003026175.1    Uniprot ID   A0AAD2YB17
Organism   Streptococcus anginosus strain FDAARGOS_1357     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1907562..1918485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K87_RS09490 (I6K87_09490) amiC 1909053..1910549 (+) 1497 WP_204982605.1 ABC transporter permease Regulator
  I6K87_RS09495 (I6K87_09495) amiD 1910549..1911475 (+) 927 WP_003026180.1 oligopeptide ABC transporter permease OppC Regulator
  I6K87_RS09500 (I6K87_09500) amiE 1911484..1912551 (+) 1068 WP_003039437.1 ABC transporter ATP-binding protein Regulator
  I6K87_RS09505 (I6K87_09505) amiF 1912562..1913485 (+) 924 WP_003026175.1 ATP-binding cassette domain-containing protein Regulator
  I6K87_RS09510 (I6K87_09510) - 1913628..1914464 (+) 837 WP_003039829.1 Cof-type HAD-IIB family hydrolase -
  I6K87_RS09515 (I6K87_09515) - 1914524..1915489 (-) 966 WP_003039503.1 LacI family DNA-binding transcriptional regulator -
  I6K87_RS09520 (I6K87_09520) - 1915470..1916927 (-) 1458 WP_003039426.1 sucrose-6-phosphate hydrolase -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34861.05 Da        Isoelectric Point: 6.4264

>NTDB_id=537289 I6K87_RS09505 WP_003026175.1 1912562..1913485(+) (amiF) [Streptococcus anginosus strain FDAARGOS_1357]
MPEKLVEVKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSHGEIFFEGKKINGKKSKE
EESEIIRKIQMIFQDPAASLNERATVDYIISEGLYNFHLFKDEEERKKKVKDIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDANQHDYSTDKPEMVEIRPGHFVWANKAEVEKYKKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=537289 I6K87_RS09505 WP_003026175.1 1912562..1913485(+) (amiF) [Streptococcus anginosus strain FDAARGOS_1357]
ATGCCTGAAAAATTAGTAGAAGTTAAAGATTTGGAAATTTCCTTCGGTGAGGGAAGCAAGAAATTTGTTGCTGTTAAAAA
TGCTAATTTCTTTATCAATAAAGGAGAAACGTTTTCACTTGTAGGAGAATCTGGTTCTGGTAAAACAACAATTGGTCGTG
CGATTATTGGTTTAAATGATACGAGTCATGGAGAGATTTTCTTTGAAGGGAAAAAAATTAATGGCAAAAAATCAAAAGAA
GAAGAGTCAGAAATCATTCGTAAAATTCAAATGATTTTCCAAGACCCTGCTGCTAGTTTGAATGAACGTGCGACAGTTGA
TTATATCATTTCGGAAGGCTTGTATAATTTCCACTTATTTAAAGATGAAGAAGAACGCAAGAAAAAAGTGAAAGATATTA
TTCATGAAGTTGGATTGTTATCAGAGCATTTAACGCGTTACCCGCATGAATTTTCTGGTGGTCAACGTCAGCGGATTGGG
ATTGCCCGTGCGCTTGTTATGGAACCAGATTTTGTCATTGCCGATGAGCCGATTTCAGCTTTGGACGTGTCTGTGCGGGC
ACAAGTTTTAAACCTACTGAAAAAATTCCAAAAAGAATTAGGTTTGACTTATCTCTTTATTGCTCACGATTTATCGGTTG
TACGCTTCATTTCAGATCGTATTGCGGTTATTTATAAGGGTGTGATTGTCGAAGTAGCTGAAACAGAAGAACTCTTTAAC
AATCCAATTCATCCTTATACTCAGTCTTTATTGTCAGCTGTGCCAATTCCAGATCCAATATTGGAGCGGAAGAAAGTGTT
GAAAGTCTATGATGCTAATCAGCATGATTATTCAACGGATAAGCCAGAAATGGTCGAAATTCGTCCTGGACACTTTGTGT
GGGCTAATAAAGCAGAAGTTGAAAAATATAAAAAAGAATTATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

88.235

99.674

0.879
  amiF Streptococcus salivarius strain HSISS4

88.235

99.674

0.879
  amiF Streptococcus thermophilus LMD-9

87.908

99.674

0.876