Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AMBAS45_RS19725 Genome accession   NC_018679
Coordinates   4573592..4575106 (+) Length   504 a.a.
NCBI ID   WP_014980746.1    Uniprot ID   -
Organism   Alteromonas macleodii str. 'Balearic Sea AD45'     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4568592..4580106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMBAS45_RS19710 (AMBAS45_19490) ilvA 4568907..4570460 (-) 1554 WP_014980744.1 threonine ammonia-lyase, biosynthetic -
  AMBAS45_RS19715 (AMBAS45_19495) ilvD 4570460..4572310 (-) 1851 WP_014980745.1 dihydroxy-acid dehydratase -
  AMBAS45_RS19720 (AMBAS45_19500) - 4572753..4573370 (+) 618 WP_014951393.1 trimeric intracellular cation channel family protein -
  AMBAS45_RS19725 (AMBAS45_19505) comM 4573592..4575106 (+) 1515 WP_014980746.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AMBAS45_RS19730 (AMBAS45_19510) ilvY 4575127..4575999 (-) 873 WP_014977812.1 HTH-type transcriptional activator IlvY -
  AMBAS45_RS19735 (AMBAS45_19515) ilvC 4576157..4577635 (+) 1479 WP_014951396.1 ketol-acid reductoisomerase -
  AMBAS45_RS19740 (AMBAS45_19520) - 4577784..4579034 (-) 1251 WP_014980747.1 multidrug effflux MFS transporter -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54135.83 Da        Isoelectric Point: 6.4073

>NTDB_id=53716 AMBAS45_RS19725 WP_014980746.1 4573592..4575106(+) (comM) [Alteromonas macleodii str. 'Balearic Sea AD45']
MGMAVVKTFAGQGVAAPEVSVEIHLANGLPAFQLVGMAETSVKEARERVRSALINSGFEFPAKRITVNLAPADIPKFGGR
FDLPIAVGILAASGYISDISLLNIAFVGELALNGEIKPVNGLIPVVMTAANEDIALVYPGDNDVEAALVSHATRYPAFDL
LSVYEHLTGNKKLAKGQPFSSRAPNKTLTGWDDIIGQEQAKRALIIAASGAHNLLMVGPPGTGKSLLASRMLSLLPDMSE
EEALEVAAIHSVKGEKLHAERFLTRHLRSPHHTSSAVALTGGGSNPVPGEISLAHNGILFLDELPEFGRKALDVLREPLE
TGDVHLSRASGSATYPANFQLVAAMNPSPTGDIDDNRLTPQQQLNYLNRLSGPLLDRIDIQVEVPRLPDYDLPERANRPD
DSLHATRERVIAARHKQGLRQGKPNGALHAGELADICLLDDADLQFLQAAAKQLNLSMRVFHRTLKVARTIADLEEQNAV
SRAHIAEALGYRALDNLIKQLSAS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=53716 AMBAS45_RS19725 WP_014980746.1 4573592..4575106(+) (comM) [Alteromonas macleodii str. 'Balearic Sea AD45']
ATGGGAATGGCTGTTGTTAAAACCTTCGCAGGGCAGGGCGTGGCAGCGCCAGAGGTAAGTGTAGAGATTCACCTAGCTAA
TGGTTTACCTGCTTTTCAACTGGTCGGTATGGCAGAAACCAGCGTTAAAGAAGCGCGAGAAAGAGTACGCAGTGCCCTGA
TAAACAGTGGCTTTGAGTTTCCCGCAAAACGAATAACCGTCAATTTAGCGCCTGCAGATATTCCCAAGTTTGGCGGGCGG
TTCGACCTTCCCATCGCCGTAGGCATTTTAGCTGCGTCGGGCTACATCTCAGACATTAGCCTGCTCAACATTGCCTTTGT
GGGCGAGCTTGCATTAAACGGAGAAATAAAGCCGGTTAACGGGCTTATTCCTGTTGTAATGACAGCCGCAAACGAAGACA
TTGCGCTCGTGTACCCAGGAGATAATGACGTAGAAGCCGCATTGGTTTCTCATGCAACGCGCTATCCCGCTTTCGATTTA
CTGTCTGTATATGAACACCTAACCGGGAACAAAAAGCTCGCTAAAGGCCAGCCATTTAGTTCGCGGGCGCCTAACAAAAC
CTTAACAGGGTGGGATGACATTATCGGTCAAGAGCAAGCCAAACGAGCGCTTATTATCGCGGCAAGTGGAGCACATAATC
TTCTGATGGTTGGCCCTCCAGGCACAGGCAAAAGTTTACTCGCCAGCCGAATGCTGTCGCTATTACCCGATATGAGCGAG
GAAGAAGCGTTGGAAGTGGCCGCCATTCACTCGGTGAAAGGCGAAAAACTGCATGCAGAGCGGTTTCTAACACGCCACTT
GCGTTCGCCCCACCATACTAGCTCTGCGGTGGCACTTACTGGCGGCGGCTCAAACCCTGTACCGGGTGAAATATCGCTGG
CCCATAATGGTATTTTGTTTCTAGACGAACTGCCTGAATTTGGCAGAAAAGCACTGGATGTATTGCGCGAGCCACTTGAA
ACGGGCGATGTGCATTTGTCTCGTGCTTCAGGAAGCGCCACATACCCCGCTAACTTTCAATTAGTAGCGGCAATGAACCC
AAGCCCGACGGGTGATATTGATGATAACCGACTAACCCCGCAGCAACAGCTCAACTACTTGAACCGATTATCGGGCCCAC
TGCTTGATAGAATAGATATACAAGTCGAAGTGCCTCGGCTACCTGACTACGACCTGCCAGAGCGTGCCAATAGACCTGAC
GACTCGTTACACGCAACGCGAGAGCGAGTCATTGCAGCGCGTCACAAACAAGGGCTACGGCAAGGTAAGCCAAATGGTGC
GCTGCACGCGGGTGAGCTTGCCGATATATGCTTGCTAGATGACGCTGACTTGCAGTTTTTACAAGCCGCTGCTAAACAGC
TTAATTTGTCTATGCGGGTGTTTCATCGCACGTTAAAAGTGGCAAGAACCATTGCTGACCTTGAAGAGCAAAACGCTGTA
TCGCGGGCGCACATTGCAGAAGCATTGGGCTATCGCGCTCTCGATAACCTTATTAAACAGTTGAGCGCTAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-388)

Subunit ChlI of Mg-chelatase (ChlI)

(21-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.861

100

0.54
  comM Vibrio campbellii strain DS40M4

53.069

100

0.532
  comM Glaesserella parasuis strain SC1401

51.976

100

0.522
  comM Haemophilus influenzae Rd KW20

50.984

100

0.514
  comM Legionella pneumophila str. Paris

45.565

98.413

0.448
  comM Legionella pneumophila strain ERS1305867

45.565

98.413

0.448
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.435

Multiple sequence alignment