Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AMEC673_RS19535 Genome accession   NC_018678
Coordinates   4530633..4532147 (+) Length   504 a.a.
NCBI ID   WP_014977811.1    Uniprot ID   A0AB33A483
Organism   Alteromonas macleodii str. 'English Channel 673'     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4525633..4537147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMEC673_RS19520 (AMEC673_19250) ilvA 4525961..4527514 (-) 1554 WP_014977809.1 threonine ammonia-lyase, biosynthetic -
  AMEC673_RS19525 (AMEC673_19255) ilvD 4527514..4529364 (-) 1851 WP_014977810.1 dihydroxy-acid dehydratase -
  AMEC673_RS19530 (AMEC673_19260) - 4529807..4530424 (+) 618 WP_014951393.1 trimeric intracellular cation channel family protein -
  AMEC673_RS19535 (AMEC673_19265) comM 4530633..4532147 (+) 1515 WP_014977811.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AMEC673_RS19540 (AMEC673_19270) ilvY 4532168..4533040 (-) 873 WP_014977812.1 HTH-type transcriptional activator IlvY -
  AMEC673_RS19545 (AMEC673_19275) ilvC 4533198..4534676 (+) 1479 WP_014951396.1 ketol-acid reductoisomerase -
  AMEC673_RS19550 (AMEC673_19280) - 4534810..4536057 (-) 1248 WP_170826522.1 multidrug effflux MFS transporter -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54100.65 Da        Isoelectric Point: 6.3781

>NTDB_id=53699 AMEC673_RS19535 WP_014977811.1 4530633..4532147(+) (comM) [Alteromonas macleodii str. 'English Channel 673']
MGMAVVKTFAGQGVAAPEVSVEIHLANGLPAFQLVGMAETSVKEARERVRSALINSGFEFPAKRITVNLAPADIPKFGGR
FDLPIAVGILAASGYISDISLLNIAFVGELALNGEIKPVNGLIPVVMAAAHEDIALVYPGDNDVEAALVSHATRYPAFDL
LSVYEHLTGNKKLAKGQPFTSHSSRSASTGWDDIIGQEQAKRALVIAASGAHNLLMVGPPGTGKSLLASRMLSLLPDMSE
EEALEVAAIHSVKGEKLHAERFLTRHLRSPHHTSSAVALTGGGSNPVPGEISLAHNGILFLDELPEFGRKALDVLREPLE
TGDVHLSRASGSATYPANFQLVAAMNPSPTGDIDDNRLTPQQQLNYLNRLSGPLLDRIDIQVEVPRLPDYDLPERANRPD
DSLHATRERVIAARHKQGLRQGKPNGALHAGELADICLLDDADLQFLQAAAKQLNLSMRVFHRTLKVARTIADLEDEHAV
SRAHIAEALGYRALDNLIKQLSTS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=53699 AMEC673_RS19535 WP_014977811.1 4530633..4532147(+) (comM) [Alteromonas macleodii str. 'English Channel 673']
ATGGGAATGGCTGTTGTTAAAACCTTTGCAGGGCAGGGCGTGGCAGCGCCAGAGGTAAGTGTAGAGATTCACCTAGCTAA
TGGTTTACCTGCTTTTCAACTGGTCGGCATGGCAGAAACCAGCGTTAAAGAAGCGCGAGAAAGAGTACGCAGCGCCCTGA
TAAACAGTGGTTTTGAGTTTCCCGCAAAACGAATAACCGTCAATTTAGCGCCAGCAGATATTCCCAAGTTTGGCGGGCGG
TTCGACCTTCCCATTGCCGTAGGCATTTTAGCTGCGTCGGGCTACATCTCAGACATTAGCCTGCTCAACATTGCCTTTGT
GGGCGAGCTTGCATTAAACGGCGAAATAAAGCCGGTTAACGGGCTTATTCCTGTTGTCATGGCAGCCGCACACGAAGACA
TTGCGCTCGTATATCCGGGTGATAATGACGTAGAGGCTGCATTGGTTTCTCATGCAACACGCTATCCCGCTTTCGATTTA
CTGTCTGTTTATGAACACCTTACCGGCAACAAAAAACTCGCCAAAGGCCAGCCGTTTACTTCTCATTCATCACGCAGCGC
TTCAACTGGTTGGGACGATATTATCGGCCAAGAGCAAGCCAAACGAGCGCTTGTTATCGCAGCAAGTGGAGCACACAATT
TACTTATGGTGGGCCCTCCAGGCACAGGCAAAAGTTTACTCGCCAGCCGAATGCTATCGCTATTACCCGATATGAGCGAG
GAAGAGGCGTTGGAAGTGGCTGCCATTCACTCTGTGAAAGGCGAAAAACTGCATGCAGAGCGTTTTCTAACTCGCCACCT
CCGCTCGCCCCATCATACTAGCTCTGCGGTGGCGCTTACTGGCGGTGGCTCAAACCCTGTACCGGGTGAAATATCGCTGG
CTCATAATGGTATTTTGTTTCTAGACGAACTGCCTGAATTTGGGCGAAAGGCACTGGATGTATTGCGCGAGCCACTTGAA
ACCGGCGACGTGCATTTGTCTCGTGCTTCAGGAAGCGCGACATACCCCGCTAACTTTCAATTAGTAGCGGCAATGAACCC
AAGCCCGACAGGTGACATTGATGATAACCGACTAACCCCGCAGCAACAGCTCAACTACTTGAACCGATTATCGGGCCCAC
TGCTTGATAGAATTGATATACAAGTCGAAGTGCCGCGCCTACCTGACTACGACCTGCCAGAGCGTGCCAATAGACCTGAC
GACTCGTTACACGCAACGCGAGAGCGAGTCATTGCAGCGCGTCACAAACAAGGGCTACGGCAAGGTAAGCCAAATGGTGC
GCTGCACGCAGGTGAGCTTGCCGATATATGTCTGCTAGACGACGCTGATTTGCAGTTTCTACAAGCCGCTGCTAAACAGC
TTAATTTGTCTATGCGGGTGTTTCATCGCACGTTAAAAGTGGCAAGAACCATTGCAGATCTTGAAGATGAGCACGCCGTA
TCGCGGGCGCACATTGCAGAAGCATTGGGCTATCGCGCCCTCGATAACCTTATTAAACAGTTGAGCACTAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-388)

Subunit ChlI of Mg-chelatase (ChlI)

(21-136)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.365

100

0.544
  comM Vibrio campbellii strain DS40M4

53.175

100

0.532
  comM Haemophilus influenzae Rd KW20

51.575

100

0.52
  comM Glaesserella parasuis strain SC1401

51.383

100

0.516
  comM Legionella pneumophila str. Paris

45.766

98.413

0.45
  comM Legionella pneumophila strain ERS1305867

45.766

98.413

0.45
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.998

100

0.433

Multiple sequence alignment