Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JS559_RS02520 Genome accession   NZ_CP069795
Coordinates   549570..550094 (-) Length   174 a.a.
NCBI ID   WP_005601045.1    Uniprot ID   A0A448TYP9
Organism   Actinobacillus pleuropneumoniae strain A-85/14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 544570..555094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS559_RS02490 (JS559_02495) - 544764..545852 (+) 1089 WP_005618943.1 hypothetical protein -
  JS559_RS02495 (JS559_02500) - 545849..546277 (+) 429 WP_005618945.1 three component ABC system middle component -
  JS559_RS02500 - 546274..547206 (+) 933 WP_237611124.1 AAA family ATPase -
  JS559_RS02505 - 547163..548263 (+) 1101 WP_237611125.1 DUF3732 domain-containing protein -
  JS559_RS02510 - 548427..548510 (-) 84 Protein_486 alcohol dehydrogenase -
  JS559_RS02515 (JS559_02510) - 548587..549405 (+) 819 WP_005601047.1 GIY-YIG nuclease family protein -
  JS559_RS02520 (JS559_02515) ssb 549570..550094 (-) 525 WP_005601045.1 single-stranded DNA-binding protein Machinery gene
  JS559_RS02525 (JS559_02520) uvrA 550245..553073 (+) 2829 WP_005601043.1 excinuclease ABC subunit UvrA -
  JS559_RS02530 (JS559_02525) - 553212..553424 (-) 213 WP_005597221.1 hypothetical protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19243.04 Da        Isoelectric Point: 4.9839

>NTDB_id=536660 JS559_RS02520 WP_005601045.1 549570..550094(-) (ssb) [Actinobacillus pleuropneumoniae strain A-85/14]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVAGQYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLGGRNQGGDFAGNQGGWGNSAPAPQQSYNQGNSGYGYDQTASRPAQQAAKPAQ
AEPPMDNFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=536660 JS559_RS02520 WP_005601045.1 549570..550094(-) (ssb) [Actinobacillus pleuropneumoniae strain A-85/14]
ATGGCAGGTATTAATAAAGTTATCATCGTGGGCAATTTAGGTAACGATCCTGAAATGCGCACCATGCCAAACGGCGAAGC
GGTTGCAAATATTAGCGTAGCAACCAGTGAAAGTTGGACGGATAAAAATACGGGCGAACGCCGTGAAGTAACCGAATGGC
ACCGTATCGTATTCTACCGTCGCCAAGCGGAAGTTGCCGGTCAATACTTACGTAAAGGCTCACAAGTTTATGTTGAAGGC
CGTTTAAAAACACGTAAATGGCAAGACCAAAACGGTCAAGACCGTTATACCACCGAAATCCAAGGTGACGTTTTACAAAT
GTTAGGCGGACGTAACCAAGGCGGTGATTTCGCCGGTAACCAAGGCGGTTGGGGAAATTCAGCACCTGCACCACAACAAA
GTTATAACCAAGGTAACAGCGGTTACGGCTACGATCAAACAGCAAGCCGCCCTGCTCAACAAGCAGCAAAACCAGCTCAA
GCAGAACCACCTATGGATAACTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A448TYP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

77.473

100

0.81
  ssb Vibrio cholerae strain A1552

58.757

100

0.598
  ssb Neisseria meningitidis MC58

48.571

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.571

100

0.489
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.571

100

0.368