Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JSQ74_RS14700 Genome accession   NZ_CP069710
Coordinates   3055441..3056937 (-) Length   498 a.a.
NCBI ID   WP_204084127.1    Uniprot ID   -
Organism   Escherichia coli strain EA2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3050441..3061937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSQ74_RS14690 (JSQ74_14690) hdfR 3054120..3054959 (-) 840 WP_000379245.1 HTH-type transcriptional regulator HdfR -
  JSQ74_RS14695 (JSQ74_14695) maoP 3055078..3055416 (+) 339 WP_000841001.1 macrodomain Ori organization protein MaoP -
  JSQ74_RS14700 (JSQ74_14700) comM 3055441..3056937 (-) 1497 WP_204084127.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JSQ74_RS14705 (JSQ74_14705) ilvL 3057290..3057388 (+) 99 WP_001311244.1 ilv operon leader peptide -
  JSQ74_RS14710 (JSQ74_14710) ilvX 3057475..3057525 (+) 51 WP_001387183.1 peptide IlvX -
  JSQ74_RS14715 (JSQ74_14715) ilvG 3057528..3059174 (+) 1647 WP_001012607.1 acetolactate synthase 2 catalytic subunit -
  JSQ74_RS14720 (JSQ74_14720) ilvM 3059171..3059434 (+) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  JSQ74_RS14725 (JSQ74_14725) ilvE 3059454..3060383 (+) 930 WP_000208520.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 54261.32 Da        Isoelectric Point: 7.3874

>NTDB_id=536540 JSQ74_RS14700 WP_204084127.1 3055441..3056937(-) (comM) [Escherichia coli strain EA2]
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHL
QAVCAFLEGKHALERPKPTDAVSRALQHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQ
RVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAMWLEGTLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEA
VSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=536540 JSQ74_RS14700 WP_204084127.1 3055441..3056937(-) (comM) [Escherichia coli strain EA2]
ATGTCACTGTCAATTGTTCATACCCGCGCAGCCCTGGGAGTAAATGCGCCCCCGATCACTGTTGAGGTACATATCAGTAA
AGGTCTACCCGGCTTAACGATGGTGGGCTTACCAGAAACAACGGTAAAAGAAGCTCGCGATCGCGTGCGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACCATCAACCTGGCTCCAGCTGATCTGCCAAAAGAAGGGGGACGA
TATGATTTACCTATCGCCATTGCGTTGCTGGCGGCCTCAGAACAGCTTACAGCCAATAAGTTAGATGAATATGAATTAGT
CGGAGAACTGGCGCTTACAGGCGCTCTGCGTGGCGTTCCCGGCGCAATCTCCAGTGCAACTGAAGCTATTAAGTCGGGCA
GAAAAATTATCGTCGCGAAAGATAACGAAGATGAAGTGGGGCTAATTAACGGTGAAGGATGCCTGATAGCCGATCATCTG
CAAGCTGTCTGTGCGTTTCTGGAAGGTAAGCACGCTCTCGAACGCCCGAAACCAACTGATGCAGTATCCCGGGCGCTACA
ACATGATCTCAGTGATGTTATCGGTCAGGAACAAGGAAAGCGAGGACTGGAAATTACCGCCGCTGGCGGGCACAACCTTT
TACTGATTGGGCCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTGTTGCCAGATTTAAGCAATGAA
GAGGCACTGGAGAGTGCTGCGATATTAAGTCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGCCCGTTCCG
CTCACCTCATCACAGTGCATCGTTAACTGCGATGGTAGGCGGTGGCGCAATTCCAGGGCCCGGTGAAATTTCGCTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAGCTACCTGAATTTGAACGGCGTACACTGGATGCCTTGCGAGAGCCGATTGAATCC
GGGCAGATCCATCTTTCACGCACACGAGCAAAAATAACCTATCCAGCCCGTTTCCAGCTTGTTGCGGCGATGAATCCCAG
CCCTACCGGACATTATCAGGGAAACCATAACCGCTGCACGCCAGAACAGACATTACGTTATCTCGACCGCTTCGATCTCT
CACTGGAGATCCCATTACCACCCCCCGGCATTTTGAGTAAAACGGTAGTGCCGGGAGAAAGCAGCGCCACCGTTAAACAA
CGCGTAATGGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAACTGAATGCCTGGCTGGATAGTCCGGAAATACGCCA
ATTCTGCAAACTTGAGAGCGAAGATGCGATGTGGTTGGAAGGAACACTGATCCATCTGGGGTTATCGATTCGTGCCTGGC
AGCGGTTATTGAAAGTTGCACGAACCATTGCTGATATTGATCAGTCTGACATTATCACACGTCAGCATTTGCAGGAGGCA
GTTAGCTATCGTGCGATTGACCGTTTGCTCATCCATCTGCAAAAACTACTGACATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-372)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(392-484)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.367

100

0.588
  comM Haemophilus influenzae Rd KW20

57.339

100

0.588
  comM Glaesserella parasuis strain SC1401

57.199

100

0.582
  comM Vibrio campbellii strain DS40M4

57.171

100

0.576
  comM Legionella pneumophila str. Paris

47.189

100

0.472
  comM Legionella pneumophila strain ERS1305867

47.189

100

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.083

100

0.438