Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   JN756_RS02055 Genome accession   NZ_CP069594
Coordinates   474955..476283 (+) Length   442 a.a.
NCBI ID   WP_201022275.1    Uniprot ID   -
Organism   Pseudomonas sp. Y39-6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 469955..481283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN756_RS02035 (JN756_02015) - 470030..472495 (-) 2466 WP_201021742.1 penicillin-binding protein 1A -
  JN756_RS02040 (JN756_02020) pilM 472713..473366 (+) 654 WP_046385359.1 type IV pilus assembly protein PilM -
  JN756_RS02045 (JN756_02025) - 473363..473917 (+) 555 WP_046384969.1 PilN domain-containing protein -
  JN756_RS02050 (JN756_02030) - 473914..474885 (+) 972 WP_057003634.1 pilus assembly protein PilP -
  JN756_RS02055 (JN756_02035) pilQ 474955..476283 (+) 1329 WP_201022275.1 type IV pilus secretin PilQ family protein Machinery gene
  JN756_RS02060 (JN756_02040) aroK 476288..476806 (+) 519 WP_026140392.1 shikimate kinase AroK -
  JN756_RS02065 (JN756_02045) aroB 476932..478032 (+) 1101 WP_017849857.1 3-dehydroquinate synthase -
  JN756_RS02070 (JN756_02050) - 478043..479611 (+) 1569 WP_057003635.1 AAA family ATPase -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 47918.70 Da        Isoelectric Point: 4.6702

>NTDB_id=535847 JN756_RS02055 WP_201022275.1 474955..476283(+) (pilQ) [Pseudomonas sp. Y39-6]
MAAAAVPNRVDLIQLPPPGGAASGTYTGDKLNLNFQNIELRAVLQQIADVAGLNLVASDDVQGSITLRLKDVPWDQALDL
VLQSKGLDQRIKAGVLLVAPADELAARELLTLESRKQMAELAPLRRELLQVNYAKAADLAKLFQSVTGLEGATDERGSVA
VDDRTNNIIAYQTGERLEELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGRINRGNWGAGGVEKPPEPGTEPV
ENPSGSPFVDLGALTNTSGLGVAFITDNLLLDLELTAMEKTGNGEIVSQPKVVTSDKETARILKGTEIPYQESSSSGATS
VSFKEASLSLEVTPQITPDDRVIMEVKVTKDEPDYLNKLNDVPPIKKNEVNAKVLVRDGETIVIGGVFSNTQSKVLDKVP
FLGDVPYLGRLFRRDVLAEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=535847 JN756_RS02055 WP_201022275.1 474955..476283(+) (pilQ) [Pseudomonas sp. Y39-6]
ATGGCTGCTGCTGCTGTGCCCAATCGTGTGGATCTGATCCAGCTGCCGCCTCCCGGCGGTGCGGCATCAGGTACCTATAC
CGGCGACAAGCTGAACCTCAATTTCCAGAACATCGAGCTGCGCGCCGTGTTGCAGCAGATTGCCGATGTGGCGGGCCTGA
ATCTGGTCGCCAGCGACGATGTGCAAGGTTCGATCACCCTGCGGCTCAAGGACGTGCCTTGGGACCAGGCGCTGGACCTG
GTGTTGCAAAGCAAGGGGCTGGACCAGCGGATAAAGGCCGGGGTGCTGTTGGTGGCGCCCGCCGACGAGTTGGCCGCGCG
CGAGCTGCTGACGCTGGAGTCGCGCAAGCAGATGGCTGAACTGGCGCCATTGCGGCGCGAACTGTTGCAGGTCAATTACG
CCAAGGCTGCGGACCTGGCCAAGTTGTTCCAATCGGTGACCGGCCTGGAAGGCGCCACCGACGAACGCGGCTCGGTGGCG
GTGGATGACCGCACCAACAACATCATCGCCTACCAGACCGGCGAACGCCTGGAAGAGCTGCGACGCATCGTGGCGCAGCT
GGATATTCCGGTGCGCCAGGTGATGATCGAGGCGCGGATTGTTGAGGCCAATGTCGACTACGACAAAAGCCTGGGCGTGC
GCTGGGGAGGGCGGATCAATCGCGGCAACTGGGGCGCAGGCGGTGTCGAGAAACCTCCGGAGCCAGGCACCGAGCCTGTG
GAAAACCCGTCCGGCTCGCCCTTTGTCGACTTGGGGGCGCTCACCAACACTTCTGGCCTGGGTGTCGCGTTTATCACCGA
CAACCTGCTGCTGGACCTGGAACTGACCGCGATGGAAAAAACCGGCAACGGCGAGATTGTCTCGCAGCCCAAGGTGGTCA
CGTCCGACAAGGAGACCGCGCGCATCCTCAAGGGCACCGAGATTCCCTACCAGGAGTCCAGCTCCAGCGGCGCCACCTCG
GTGTCGTTCAAGGAGGCTTCGCTGTCCCTGGAAGTCACCCCGCAAATCACCCCCGACGACCGCGTGATCATGGAGGTCAA
AGTCACCAAGGATGAGCCGGATTACCTGAACAAGCTCAACGACGTACCGCCGATCAAGAAAAACGAGGTCAACGCCAAGG
TGCTGGTCAGGGACGGCGAGACCATCGTCATCGGCGGAGTTTTCTCCAATACCCAAAGCAAAGTGCTAGATAAAGTGCCA
TTTTTGGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGCGATGTGCTGGCAGAAAAAAAATCCGAGCTGCTGGTATT
CCTGACTCCGCGTATTATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(277-433)

Secretin and TonB N terminus short domain (STN)

(54-100)

Bacterial type II/III secretion system short domain (Secretin_N)

(128-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

72.706

98.643

0.717
  comQ Acinetobacter baylyi ADP1

43.363

100

0.443
  pilQ Acinetobacter baumannii D1279779

40.605

100

0.425
  pilQ Acinetobacter baumannii strain A118

40.605

100

0.425
  pilQ Legionella pneumophila strain ERS1305867

44.076

95.475

0.421
  pilQ Legionella pneumophila strain Lp02

44.076

95.475

0.421
  pilQ Vibrio campbellii strain DS40M4

43.499

95.701

0.416
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

43.062

94.57

0.407
  pilQ Vibrio cholerae strain A1552

43.062

94.57

0.407
  pilQ Neisseria meningitidis MC58

36.166

100

0.376
  pilQ Neisseria gonorrhoeae strain FA1090

35.637

100

0.373
  pilQ Neisseria meningitidis M1080

37.097

98.19

0.364