Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   I6K03_RS07585 Genome accession   NZ_CP069587
Coordinates   1553038..1554174 (-) Length   378 a.a.
NCBI ID   WP_011133735.1    Uniprot ID   -
Organism   Chromobacterium violaceum strain FDAARGOS_1273     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1548038..1559174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K03_RS07565 (I6K03_07565) - 1548438..1549223 (+) 786 WP_081527363.1 TIGR00266 family protein -
  I6K03_RS07570 (I6K03_07570) - 1549230..1549751 (-) 522 WP_081527362.1 2'-5' RNA ligase family protein -
  I6K03_RS07575 (I6K03_07575) - 1549751..1551364 (-) 1614 WP_052942147.1 response regulator -
  I6K03_RS07580 (I6K03_07580) - 1551399..1553012 (-) 1614 WP_139795212.1 response regulator -
  I6K03_RS07585 (I6K03_07585) pilU 1553038..1554174 (-) 1137 WP_011133735.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  I6K03_RS07590 (I6K03_07590) pilT 1554237..1555274 (-) 1038 WP_011133734.1 type IV pilus twitching motility protein PilT Machinery gene
  I6K03_RS07595 (I6K03_07595) - 1555412..1556107 (+) 696 WP_204086480.1 YggS family pyridoxal phosphate-dependent enzyme -
  I6K03_RS07600 (I6K03_07600) proC 1556162..1556965 (+) 804 WP_081527360.1 pyrroline-5-carboxylate reductase -
  I6K03_RS07605 (I6K03_07605) - 1556975..1557556 (+) 582 WP_045051079.1 YggT family protein -
  I6K03_RS07610 (I6K03_07610) - 1557636..1557941 (+) 306 WP_011133730.1 c-type cytochrome -
  I6K03_RS07615 (I6K03_07615) dksA 1558225..1558635 (+) 411 WP_011133729.1 RNA polymerase-binding protein DksA -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42305.49 Da        Isoelectric Point: 6.0195

>NTDB_id=535810 I6K03_RS07585 WP_011133735.1 1553038..1554174(-) (pilU) [Chromobacterium violaceum strain FDAARGOS_1273]
MEKDQASKFIHDLLKHATGKNASDIFIAAEFPPAMKIDGKITPVAPQALTALQSKELVRAVMNDRQTEEFEAKKEANFAI
NPPGVGRFRVSAFVQQGMVGMVLRKINTEIPTFDQLNLPEVLKDIALIKRGLVIFVGGTGSGKSTSLAALVDWRNSNNQD
HIITIEDPIEYVHTHKKSIVTQREIGVDTENWEVALKNTLRQAPDVILMGEIRDRETMAYGLQFAETGHLCLATLHANNA
NQALDRILNFFPEERHQQVLMDLSLNMRAIISQRLVPHKSGRGRVAAVEILLNSPLVSDMVFKGEIAGLKEVMGRSREAG
MQTFDQSLFELYEAELITYEDALRNADSINDLRLRIKLYSESARNRDPLEGIDHLDIV

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=535810 I6K03_RS07585 WP_011133735.1 1553038..1554174(-) (pilU) [Chromobacterium violaceum strain FDAARGOS_1273]
ATGGAAAAAGACCAGGCCTCCAAATTCATCCACGACCTGCTCAAGCATGCGACGGGAAAGAACGCCTCCGACATCTTCAT
CGCCGCCGAATTTCCGCCGGCGATGAAGATAGACGGCAAGATCACGCCGGTGGCGCCGCAGGCGCTGACCGCCCTGCAGA
GCAAGGAACTGGTGCGCGCGGTGATGAACGACCGCCAGACCGAGGAGTTCGAGGCGAAGAAGGAAGCCAACTTCGCCATC
AACCCGCCCGGCGTCGGCCGTTTCCGCGTCAGCGCCTTCGTCCAGCAGGGCATGGTGGGCATGGTGCTGCGCAAGATCAA
CACCGAGATCCCCACCTTCGACCAGCTCAACCTGCCCGAGGTGCTGAAGGACATCGCGCTGATCAAGCGCGGCCTGGTGA
TCTTCGTCGGCGGCACCGGCTCCGGCAAGTCCACCTCGCTGGCGGCGCTGGTGGACTGGCGCAACAGCAACAACCAGGAC
CACATCATCACGATCGAAGACCCGATCGAGTACGTGCACACCCACAAGAAGTCCATCGTCACCCAACGCGAGATCGGCGT
GGACACCGAGAACTGGGAGGTCGCGCTGAAGAACACGCTGCGCCAGGCGCCGGACGTGATCCTGATGGGGGAGATCCGCG
ACCGCGAAACCATGGCCTACGGCCTGCAGTTCGCCGAAACCGGCCACCTGTGCCTGGCCACGCTGCACGCCAACAACGCC
AACCAGGCGCTGGACCGCATCCTCAACTTCTTCCCCGAAGAGCGCCACCAGCAAGTGCTGATGGACCTGTCGCTGAACAT
GCGCGCCATCATTTCGCAGCGGCTGGTGCCGCACAAGTCCGGCCGCGGCCGGGTGGCGGCGGTGGAGATCCTGCTCAACA
GCCCGCTGGTGTCGGACATGGTGTTCAAGGGCGAGATCGCCGGGCTGAAGGAGGTGATGGGACGCTCGCGCGAGGCCGGC
ATGCAGACTTTCGACCAATCGCTGTTCGAACTGTACGAGGCCGAGCTGATCACTTACGAGGATGCGCTGCGCAACGCCGA
CTCCATCAACGACCTGCGCCTGAGAATCAAGCTGTACAGCGAGAGCGCCCGCAACCGGGACCCGCTGGAAGGCATAGACC
ACCTGGATATCGTCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(14-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

60.857

92.593

0.563
  pilU Acinetobacter baylyi ADP1

54.918

96.825

0.532
  pilU Vibrio cholerae strain A1552

52.991

92.857

0.492
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.51

89.153

0.397
  pilT Pseudomonas aeruginosa PAK

40.653

89.153

0.362