NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	I6J46_RS05710	Genome accession	NZ_CP069586
Coordinates	1203652..1205139 (-)	Length	495 a.a.
NCBI ID	WP_017481904.1	Uniprot ID	-
Organism	Acinetobacter pittii strain FDAARGOS_1216
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1198652..1210139

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J46_RS05680 (I6J46_05680)	-	1198682..1198870 (+)	189	WP_017385854.1	hypothetical protein	-
I6J46_RS05685 (I6J46_05685)	-	1198909..1199721 (+)	813	WP_017385855.1	TorF family putative porin	-
I6J46_RS05690 (I6J46_05690)	-	1199763..1200641 (-)	879	WP_204085747.1	dihydrodipicolinate synthase family protein	-
I6J46_RS05695 (I6J46_05695)	-	1200657..1201433 (-)	777	WP_204085748.1	aldolase	-
I6J46_RS05700 (I6J46_05700)	mocR	1201545..1202978 (+)	1434	WP_204085749.1	PLP-dependent aminotransferase family protein	-
I6J46_RS05705 (I6J46_05705)	yieF	1203003..1203548 (-)	546	WP_005065691.1	NADPH-dependent FMN reductase	-
I6J46_RS05710 (I6J46_05710)	comM	1203652..1205139 (-)	1488	WP_017481904.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
I6J46_RS05715 (I6J46_05715)	-	1205205..1205432 (-)	228	WP_002121136.1	accessory factor UbiK family protein	-
I6J46_RS05720 (I6J46_05720)	glnK	1205711..1206049 (+)	339	WP_000780326.1	P-II family nitrogen regulator	-
I6J46_RS05725 (I6J46_05725)	amtB	1206107..1207501 (+)	1395	WP_005079483.1	ammonium transporter	-
I6J46_RS05730 (I6J46_05730)	nrdR	1207626..1208084 (+)	459	WP_000543541.1	transcriptional regulator NrdR	-
I6J46_RS05735 (I6J46_05735)	ribD	1208100..1209185 (+)	1086	WP_057085010.1	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	-

Sequence

Protein

Download Length: 495 a.a. Molecular weight: 54493.61 Da Isoelectric Point: 7.5364

                                >NTDB_id=535776 I6J46_RS05710 WP_017481904.1 1203652..1205139(-) (comM) [Acinetobacter pittii strain FDAARGOS_1216]

MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR

LDLPIAIGILIASGQLPENCAEDFELIGELALNGHVRPVPGTLTLAMACQQAKHKMLLPLDNSQDISHLPNLECYPVSHL

KEVCDHFLGMKSLSSIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN

QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE

IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE

DSTAVRQRVIYAYEQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ

SPHLTEALSYRGNHS

Nucleotide

Download Length: 1488 bp

                                >NTDB_id=535776 I6J46_RS05710 WP_017481904.1 1203652..1205139(-) (comM) [Acinetobacter pittii strain FDAARGOS_1216]

ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTCTGATTGAAGTTGAGGTACATGTGAGTCA

AGGCTTACCTTCTCTTACTATTGTCGGCCTAGCAGAGGCGGCGGTAAGAGAAAGTAAAGACCGCGTTCGCTCAGCCATTA

TTAATAGTGGATTTCAATTTCCAACAAAACGGCTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGATCACGT

CTAGATTTACCTATTGCTATAGGTATTTTAATTGCATCTGGCCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT

TGGTGAATTAGCTTTAAATGGCCATGTAAGGCCAGTGCCAGGCACTTTAACTTTGGCAATGGCGTGTCAACAGGCCAAGC

ATAAAATGCTTTTACCTCTCGATAATAGTCAGGATATTAGCCATTTACCGAATCTTGAATGTTATCCAGTGAGCCATTTA

AAAGAAGTTTGTGATCATTTCTTGGGCATGAAATCACTATCTTCGATTGAACCTGCAACGACCTCAAACCAAATGCCTTA

TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGTCCACGTCGCGCACTAGAAATTGCCGCCGCAGGCGGGCACTCGC

TGCTCTTTAAAGGACCACCAGGTACAGGTAAGACTTTACTCGCTTCACGTCTTCCTTCAATTTTGCCACCGCTTTCTAAT

CAGGAAACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACACCGCATACCTTTGGTCAGCGTCCATTTCGCGCGCC

CCACCATACAGCATCAGCGATTGCACTAGTTGGGGGCGGTTCACATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG

GGGTTTTGTTTTTAGATGAACTCCCCGAGTTTGACAGAAAAGTTCTAGAGGTCTTACGTCAGCCGCTTGAGTCAAAAGAA

ATCATTATTTCACGTGCAGCTCGGCAAATTACTTATCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCTTGTCCATG

TGGTTATGCGTTTAATCAAGACAGCCGTTGCCAATGTTCGCCAGAGAGTATCAAGCGCTATCAAAACCGTATATCGGGAC

CATTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAAGAACTGCAAGATCCAACGCCTGCTGAA

GACTCTACGGCTGTAAGACAGCGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCACT

TTCACCGAAACAACTTGAGCAATATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATGGCTCAACAACGTTTGA

ATCTGTCGGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACCATTGCCGATTTGGCGCAAAGTGAGATGATCCAA

AGTCCTCATCTTACAGAAGCGCTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio cholerae strain A1552	50.806	100	0.509
comM	Glaesserella parasuis strain SC1401	50.1	100	0.505
comM	Legionella pneumophila str. Paris	49.197	100	0.495
comM	Legionella pneumophila strain ERS1305867	49.197	100	0.495
comM	Haemophilus influenzae Rd KW20	48.898	100	0.493
comM	Vibrio campbellii strain DS40M4	47.677	100	0.477
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.924	100	0.467

Detailed information NTG0535776