Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   I6J77_RS01710 Genome accession   NZ_CP069535
Coordinates   409294..410787 (+) Length   497 a.a.
NCBI ID   WP_082585288.1    Uniprot ID   -
Organism   Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 404294..415787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J77_RS01685 (I6J77_01685) - 404816..405112 (+) 297 WP_204110323.1 GIY-YIG nuclease family protein -
  I6J77_RS01690 (I6J77_01690) - 405213..405437 (-) 225 WP_204110324.1 hypothetical protein -
  I6J77_RS01695 (I6J77_01695) - 405454..407892 (-) 2439 WP_204110325.1 ribonucleoside-diphosphate reductase subunit alpha -
  I6J77_RS01700 (I6J77_01700) glnK 408350..408688 (-) 339 WP_056717431.1 P-II family nitrogen regulator -
  I6J77_RS01705 (I6J77_01705) - 408871..409131 (+) 261 WP_040672624.1 accessory factor UbiK family protein -
  I6J77_RS01710 (I6J77_01710) comM 409294..410787 (+) 1494 WP_082585288.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  I6J77_RS01715 (I6J77_01715) - 410867..412654 (+) 1788 WP_204110326.1 sodium:proton antiporter -
  I6J77_RS01720 (I6J77_01720) aceA 412747..414045 (-) 1299 WP_204110327.1 isocitrate lyase -
  I6J77_RS01725 (I6J77_01725) aceB 414094..415707 (-) 1614 WP_204110328.1 malate synthase A -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53546.33 Da        Isoelectric Point: 7.2399

>NTDB_id=535383 I6J77_RS01710 WP_082585288.1 409294..410787(+) (comM) [Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247]
MSLAVTLSRAQEGIAAPQVMVEVHLSGGLPCTNIVGLPEAAVREARDRVRVAIQNTAFEYPGRRVTVNLAPAELPKDGGR
FDLPIALGILAASGQVPREKLDDCEFLGELALSGTLRSVSGVLPALLRARARGRRVVVPRENAAEAALVADVDVRVADTL
AEVCGWLRGAHELSMPVGIPSNGGAEDGPDLADVRGQLQARRALEITAVGGHHLLLIGPPGTGKTMLAERLPGILPPLSE
SEALETCAVLSVAGQTTDLAHWRRRPFRSPHHTASAVALVGGGSYPRPGEVSLAHNGVLFLDELPEFSRHVLEVLREPME
SGHIMISRAARQSTFPAQFQLVAAMNPCPCGYAGDPRCQCTPDQIQRYRGRISGPLLDRIDLCVEVPPVPLADLGAPRGD
RDEDSATVRARVLNARRQSLMRAGRPNAEISTRELERDCALGAPERRWFEAALERLGLSARAYHRVLRVARTIADLDGGA
ALLEREHLAEALQYRRF

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=535383 I6J77_RS01710 WP_082585288.1 409294..410787(+) (comM) [Rhodanobacter sp. FDAARGOS 1247 strain FDAARGOS_1247]
ATGAGTCTTGCCGTTACCCTCAGCCGTGCGCAGGAAGGAATCGCCGCACCGCAAGTGATGGTCGAGGTGCATCTTTCCGG
TGGTCTGCCGTGTACCAACATCGTCGGCCTGCCCGAGGCTGCGGTGCGCGAGGCGCGCGATCGCGTGCGCGTGGCGATCC
AGAACACCGCGTTCGAATACCCCGGTCGCCGCGTCACCGTGAATCTGGCGCCGGCGGAGCTGCCCAAGGACGGCGGCCGG
TTCGACCTGCCGATCGCGCTGGGCATTCTTGCCGCCAGCGGCCAGGTGCCGCGCGAGAAACTCGACGACTGTGAATTCCT
CGGCGAACTGGCGCTGAGCGGCACGCTGCGCAGCGTATCCGGCGTGCTGCCGGCGCTGCTGCGCGCGCGGGCGCGCGGGC
GCCGGGTGGTGGTGCCGCGGGAGAACGCCGCCGAAGCGGCGCTGGTGGCCGATGTCGACGTGCGCGTGGCCGATACGCTG
GCCGAGGTCTGCGGCTGGTTGCGCGGCGCCCACGAGCTGTCGATGCCGGTCGGCATTCCCAGCAACGGCGGCGCGGAAGA
TGGCCCCGACCTTGCCGACGTGCGCGGGCAGTTGCAGGCGCGTCGCGCGCTGGAAATCACCGCCGTGGGTGGCCACCACC
TGCTGCTGATCGGCCCACCCGGCACCGGCAAGACCATGCTGGCCGAACGCCTGCCCGGCATCCTGCCGCCGCTGAGCGAG
TCCGAAGCGCTGGAGACCTGCGCCGTGCTGTCGGTGGCCGGCCAGACGACCGACCTGGCGCACTGGCGACGGCGCCCGTT
CCGTTCCCCCCATCACACGGCGTCCGCGGTGGCCCTGGTCGGCGGCGGTTCGTATCCGCGGCCGGGCGAGGTGTCGCTGG
CGCACAACGGCGTGCTGTTCCTTGACGAGCTGCCGGAGTTCAGCCGGCACGTGCTGGAAGTGCTGCGCGAGCCGATGGAA
TCCGGCCACATCATGATCTCGCGGGCCGCGCGGCAGTCGACCTTTCCGGCCCAGTTCCAGCTGGTGGCGGCGATGAATCC
GTGCCCCTGCGGTTACGCCGGCGACCCCCGCTGCCAGTGCACGCCCGATCAGATCCAGCGTTATCGCGGGCGCATTTCCG
GCCCGTTGCTGGACCGCATCGACCTGTGCGTGGAAGTGCCGCCCGTACCCTTGGCCGACCTGGGTGCGCCGCGCGGCGAC
CGCGACGAGGACTCCGCCACGGTGCGCGCGCGCGTGCTCAACGCGCGGCGGCAATCGCTGATGCGGGCGGGTCGGCCCAA
TGCAGAAATCAGCACGCGTGAACTGGAGCGCGATTGTGCGTTGGGCGCACCCGAGCGGCGCTGGTTCGAGGCCGCGCTGG
AGCGGCTGGGCCTGTCCGCGCGCGCCTATCACCGCGTGCTGCGGGTGGCCCGCACGATCGCCGACCTGGACGGCGGCGCC
GCCCTGCTCGAACGCGAGCACCTGGCCGAGGCGCTGCAGTACCGCCGCTTCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.556

99.598

0.553
  comM Vibrio campbellii strain DS40M4

54.747

99.598

0.545
  comM Glaesserella parasuis strain SC1401

53.307

100

0.535
  comM Haemophilus influenzae Rd KW20

53.307

100

0.535
  comM Legionella pneumophila str. Paris

50.902

100

0.511
  comM Legionella pneumophila strain ERS1305867

50.902

100

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.181

100

0.453