Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   I6J47_RS15365 Genome accession   NZ_CP069496
Coordinates   3194014..3194823 (+) Length   269 a.a.
NCBI ID   WP_204086971.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS_1217     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3189014..3199823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J47_RS15330 (I6J47_15330) - 3189573..3189727 (-) 155 Protein_3003 hypothetical protein -
  I6J47_RS15335 (I6J47_15335) rpoZ 3189766..3190044 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  I6J47_RS15340 (I6J47_15340) gmk 3190117..3190746 (-) 630 WP_005804544.1 guanylate kinase -
  I6J47_RS15345 (I6J47_15345) ispH 3190869..3191819 (+) 951 WP_032006348.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6J47_RS15350 (I6J47_15350) fimU 3191989..3192462 (+) 474 WP_005067119.1 pilus assembly FimT family protein Machinery gene
  I6J47_RS15355 (I6J47_15355) pilV 3192456..3193016 (+) 561 WP_078219781.1 type IV pilus modification protein PilV Machinery gene
  I6J47_RS15360 (I6J47_15360) pilW 3193016..3194017 (+) 1002 WP_032052645.1 PilW family protein Machinery gene
  I6J47_RS15365 (I6J47_15365) pilX 3194014..3194823 (+) 810 WP_204086971.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6J47_RS15370 (I6J47_15370) pilY1 3194835..3198689 (+) 3855 WP_032052644.1 PilC/PilY family type IV pilus protein Machinery gene
  I6J47_RS15375 (I6J47_15375) pilY2 3198700..3199182 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  I6J47_RS15380 (I6J47_15380) pilE 3199179..3199604 (+) 426 WP_014207809.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28543.41 Da        Isoelectric Point: 7.7238

>NTDB_id=535104 I6J47_RS15365 WP_204086971.1 3194014..3194823(+) (pilX) [Acinetobacter pittii strain FDAARGOS_1217]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTSTNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSVPTD
AANDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSAAKISDNFDTALTAKLTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=535104 I6J47_RS15365 WP_204086971.1 3194014..3194823(+) (pilX) [Acinetobacter pittii strain FDAARGOS_1217]
ATGACCCATTTAATTCATAAGAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACTCCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAACCCAGGTGCAGAATACAATTTTTGTTATAAGCCTGTTTCTACATCAACAAA
TTTTGCTCAGACTAGAGGCGCAAGTTTACTTCGAGCAGGAAGTGCCAATAATGCGGTTGTCGAAGATGGCGGAGTGGCGG
GTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAACGATATTCCAGGTTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTACCTAAAAGCATGTT
GTCTACGCAACGTATTCGGGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTGCAGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACTAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.338

100

0.903