Detailed information NTG0535102

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LGS58_RS06165
• Genome accession: NZ_CP084683
• Coordinates: 1243437..1244462 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain BL21(RP)
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1238437..1249462

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LGS58_RS06140 (LGS58_06140)	metJ	1238874..1239191 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
LGS58_RS06145 (LGS58_06145)	yiiX	1239375..1239983 (+)	609	WP_000797341.1	YiiX family permuted papain-like enzyme	-
LGS58_RS06150 (LGS58_06150)	-	1239990..1240613 (+)	624	WP_000720774.1	TIGR02117 family protein	-
LGS58_RS06155 (LGS58_06155)	rpmE	1240668..1240880 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
LGS58_RS06160 (LGS58_06160)	priA	1241083..1243281 (+)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
LGS58_RS06165 (LGS58_06165)	cytR	1243437..1244462 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LGS58_RS06170 (LGS58_06170)	ftsN	1244554..1245513 (+)	960	WP_000068828.1	cell division protein FtsN	-
LGS58_RS06175 (LGS58_06175)	hslV	1245606..1246136 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LGS58_RS06180 (LGS58_06180)	hslU	1246146..1247477 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
LGS58_RS06185 (LGS58_06185)	menA	1247544..1248470 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LGS58_RS06190 (LGS58_06190)	rraA	1248563..1249048 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LGS58_RS06195 (LGS58_06195)	zapB	1249133..1249378 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=535102 LGS58_RS06165 WP_000644904.1 1243437..1244462(+) (cytR) [Escherichia coli strain BL21(RP)]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=535102 LGS58_RS06165 WP_000644904.1 1243437..1244462(+) (cytR) [Escherichia coli strain BL21(RP)]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628