Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   I6J47_RS15350 Genome accession   NZ_CP069496
Coordinates   3191989..3192462 (+) Length   157 a.a.
NCBI ID   WP_005067119.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS_1217     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3186989..3197462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J47_RS15325 (I6J47_15325) spoT 3187452..3189557 (-) 2106 WP_002116807.1 RelA/SpoT family protein -
  I6J47_RS15330 (I6J47_15330) - 3189573..3189727 (-) 155 Protein_3003 hypothetical protein -
  I6J47_RS15335 (I6J47_15335) rpoZ 3189766..3190044 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  I6J47_RS15340 (I6J47_15340) gmk 3190117..3190746 (-) 630 WP_005804544.1 guanylate kinase -
  I6J47_RS15345 (I6J47_15345) ispH 3190869..3191819 (+) 951 WP_032006348.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6J47_RS15350 (I6J47_15350) fimU 3191989..3192462 (+) 474 WP_005067119.1 pilus assembly FimT family protein Machinery gene
  I6J47_RS15355 (I6J47_15355) pilV 3192456..3193016 (+) 561 WP_078219781.1 type IV pilus modification protein PilV Machinery gene
  I6J47_RS15360 (I6J47_15360) pilW 3193016..3194017 (+) 1002 WP_032052645.1 PilW family protein Machinery gene
  I6J47_RS15365 (I6J47_15365) pilX 3194014..3194823 (+) 810 WP_204086971.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16912.60 Da        Isoelectric Point: 7.7942

>NTDB_id=535101 I6J47_RS15350 WP_005067119.1 3191989..3192462(+) (fimU) [Acinetobacter pittii strain FDAARGOS_1217]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=535101 I6J47_RS15350 WP_005067119.1 3191989..3192462(+) (fimU) [Acinetobacter pittii strain FDAARGOS_1217]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTAGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAAGACGTTTCTATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAGCTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCGTTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGGGTGATAACTAATATTACCCAAGACACACTTTTATCTATCTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

88.535

100

0.885