Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   I6J47_RS15375 Genome accession   NZ_CP069496
Coordinates   3198700..3199182 (+) Length   160 a.a.
NCBI ID   WP_002116770.1    Uniprot ID   A0A009RUX0
Organism   Acinetobacter pittii strain FDAARGOS_1217     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3193700..3204182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J47_RS15365 (I6J47_15365) pilX 3194014..3194823 (+) 810 WP_204086971.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6J47_RS15370 (I6J47_15370) pilY1 3194835..3198689 (+) 3855 WP_032052644.1 PilC/PilY family type IV pilus protein Machinery gene
  I6J47_RS15375 (I6J47_15375) pilY2 3198700..3199182 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  I6J47_RS15380 (I6J47_15380) pilE 3199179..3199604 (+) 426 WP_014207809.1 type IV pilin protein Machinery gene
  I6J47_RS15385 (I6J47_15385) rpsP 3199752..3200003 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  I6J47_RS15390 (I6J47_15390) rimM 3200023..3200571 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  I6J47_RS15395 (I6J47_15395) trmD 3200614..3201369 (+) 756 WP_005067137.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  I6J47_RS15400 (I6J47_15400) rplS 3201589..3201957 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  I6J47_RS15405 (I6J47_15405) lip 3202010..3202951 (-) 942 WP_080612940.1 lipase family alpha/beta hydrolase -
  I6J47_RS15410 (I6J47_15410) - 3203067..3204098 (-) 1032 WP_017481713.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17520.76 Da        Isoelectric Point: 8.4721

>NTDB_id=535106 I6J47_RS15375 WP_002116770.1 3198700..3199182(+) (pilY2) [Acinetobacter pittii strain FDAARGOS_1217]
MNKYYIQRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGAVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=535106 I6J47_RS15375 WP_002116770.1 3198700..3199182(+) (pilY2) [Acinetobacter pittii strain FDAARGOS_1217]
ATGAATAAATACTATATCCAACGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCGACGGCTTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACCACCACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGCTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAGCGGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RUX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.75

100

0.938
  comE Acinetobacter baylyi ADP1

40.678

100

0.45