Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   I6J47_RS12315 Genome accession   NZ_CP069496
Coordinates   2545372..2546859 (+) Length   495 a.a.
NCBI ID   WP_057076921.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS_1217     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2540372..2551859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J47_RS12290 (I6J47_12290) ribD 2541326..2542411 (-) 1086 WP_001292498.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  I6J47_RS12295 (I6J47_12295) nrdR 2542427..2542885 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  I6J47_RS12300 (I6J47_12300) amtB 2543010..2544404 (-) 1395 WP_005804034.1 ammonium transporter -
  I6J47_RS12305 (I6J47_12305) glnK 2544462..2544800 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  I6J47_RS12310 (I6J47_12310) - 2545079..2545306 (+) 228 WP_002121136.1 accessory factor UbiK family protein -
  I6J47_RS12315 (I6J47_12315) comM 2545372..2546859 (+) 1488 WP_057076921.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  I6J47_RS12320 (I6J47_12320) yieF 2546963..2547508 (+) 546 WP_005804029.1 NADPH-dependent FMN reductase -
  I6J47_RS12325 (I6J47_12325) mocR 2547533..2548966 (-) 1434 WP_057076920.1 PLP-dependent aminotransferase family protein -
  I6J47_RS12330 (I6J47_12330) - 2549079..2549855 (+) 777 WP_004699281.1 aldolase -
  I6J47_RS12335 (I6J47_12335) - 2549871..2550749 (+) 879 WP_057076918.1 dihydrodipicolinate synthase family protein -
  I6J47_RS12340 (I6J47_12340) - 2550792..2551604 (-) 813 WP_017481901.1 TorF family putative porin -
  I6J47_RS12345 (I6J47_12345) - 2551643..2551831 (-) 189 WP_002121272.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54500.59 Da        Isoelectric Point: 7.3646

>NTDB_id=535090 I6J47_RS12315 WP_057076921.1 2545372..2546859(+) (comM) [Acinetobacter pittii strain FDAARGOS_1217]
MSFSKIYTRGLLGLHAPLIELEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAVGILIASGQLPENCAEDFELIGELALDGHVRLVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPNLECYPVSHL
KEVCDHFLGMKSLSSIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTAVRQRVIYAYEQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=535090 I6J47_RS12315 WP_057076921.1 2545372..2546859(+) (comM) [Acinetobacter pittii strain FDAARGOS_1217]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCGCCTCTGATTGAACTTGAGGTACATGTGAGTCA
AGGTTTACCTTCTCTTACTATTGTCGGCCTAGCAGAGGCGGCGGTAAGAGAAAGTAAAGACCGGGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAATTTCCAACTAAAAGATTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGTTCACGT
CTAGATTTACCTATTGCTGTAGGTATTTTAATTGCTTCTGGCCAGCTCCCAGAAAACTGCGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCTTTAGATGGCCATGTAAGGCTAGTGTCAGGCACTTTAACTTTGGCAATGGCATGTCAACAGGCCAAGC
ATAAAATGCTTTTACCTCTCGATAACAGTCAGGATATTAGCCATTTACCGAATCTTGAATGTTATCCAGTGAGCCATTTA
AAAGAAGTTTGTGATCATTTCTTGGGCATGAAATCACTATCTTCGATTGAACCTGCAACGACCTCAAACCAAATGCCTTA
TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGTCCACGTCGCGCACTAGAAATTGCCGCCGCAGGCGGGCACTCGC
TGCTCTTTAAAGGACCACCAGGTACAGGTAAGACTTTACTCGCTTCACGTCTTCCTTCAATTTTGCCACCGCTTTCTAAT
CAGGAAACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACACCGCATACCTTTGGTCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCCATTGCACTAGTTGGGGGCGGCTCGCATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG
GCGTTTTGTTTTTAGATGAACTCCCTGAGTTTGATAGAAAAGTTCTAGAGGTCTTACGTCAGCCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACTTATCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCTTGTCCATG
TGGTTATGCGTTTAATCAAGACAGCCGTTGCCAATGTTCGCCAGAGAGTATCAAGCGCTATCAAAACCGTATATCGGGAC
CATTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAGGAACTGCAAGATCCAACACCTGCTGAA
GACTCTACGGCTGTAAGACAGCGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCACT
TTCACCGAAACAACTTGAGCAATATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATGGCTCAACAACGTTTGA
ATCTGTCGGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACCATTGCCGATTTGGCGCAAAGTGAGATGATCCAA
AGTCCTCATCTTACAGAAGCGCTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(22-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.605

100

0.507
  comM Glaesserella parasuis strain SC1401

49.9

100

0.503
  comM Legionella pneumophila str. Paris

49.197

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.197

100

0.495
  comM Haemophilus influenzae Rd KW20

48.697

100

0.491
  comM Vibrio campbellii strain DS40M4

47.475

100

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.467