Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JRI60_RS43245 Genome accession   NZ_CP069396
Coordinates   10873264..10873782 (-) Length   172 a.a.
NCBI ID   WP_204221909.1    Uniprot ID   -
Organism   Archangium violaceum strain SDU8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 10868264..10878782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRI60_RS43225 (JRI60_43225) selB 10868665..10870581 (-) 1917 WP_204221905.1 selenocysteine-specific translation elongation factor -
  JRI60_RS43230 (JRI60_43230) - 10870606..10871262 (-) 657 WP_204221906.1 phosphoribosyltransferase family protein -
  JRI60_RS43235 (JRI60_43235) - 10871347..10872246 (-) 900 WP_204221907.1 Hsp33 family molecular chaperone HslO -
  JRI60_RS43240 (JRI60_43240) - 10872468..10873133 (+) 666 WP_204221908.1 succinate dehydrogenase -
  JRI60_RS43245 (JRI60_43245) ssb 10873264..10873782 (-) 519 WP_204221909.1 single-stranded DNA-binding protein Machinery gene
  JRI60_RS43250 (JRI60_43250) dacB 10873963..10876209 (-) 2247 WP_204221910.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  JRI60_RS43255 (JRI60_43255) - 10876497..10877321 (-) 825 WP_204221911.1 HEAT repeat domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 17758.41 Da        Isoelectric Point: 5.2866

>NTDB_id=534424 JRI60_RS43245 WP_204221909.1 10873264..10873782(-) (ssb) [Archangium violaceum strain SDU8]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSDTWTDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCYVEG
RLQTREWTDKEGRKNYTTEVVANGVTFLGGRDGAGAGGGGGGGGRGGGYSQRGGGQQQGGGYEDYGPPPMDDGGGMGGGG
GGNGGGDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=534424 JRI60_RS43245 WP_204221909.1 10873264..10873782(-) (ssb) [Archangium violaceum strain SDU8]
ATGGCTGGAGGAGTCAACAAGGTCATCCTCATCGGCAATCTCGGCGCGGACCCGGAGGTGCGTTTCACCCCGGGCGGCCA
GGCGGTAGCCAACTTCCGCATCGCGACCAGCGACACCTGGACCGACAAGAACGGCCAGAAGCAGGAGCGCACGGAGTGGC
ACCGCATCGTGGTGTGGGGGAAGCTCGCGGAGCTCTGCGGCGAGTACCTGAAGAAGGGCCGCCAGTGCTACGTCGAGGGT
CGCCTGCAGACGCGCGAGTGGACGGACAAGGAAGGCCGCAAGAACTACACCACCGAGGTGGTGGCCAACGGAGTGACCTT
CCTCGGCGGCCGTGACGGCGCCGGCGCGGGTGGTGGCGGTGGTGGTGGCGGCCGCGGTGGTGGCTACTCGCAGCGCGGGG
GTGGCCAGCAGCAGGGCGGTGGCTACGAGGACTACGGCCCGCCTCCGATGGATGACGGCGGCGGCATGGGCGGCGGTGGT
GGCGGCAACGGCGGCGGGGACGACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.059

100

0.512
  ssb Glaesserella parasuis strain SC1401

41.081

100

0.442
  ssb Neisseria meningitidis MC58

43.353

100

0.436
  ssb Neisseria gonorrhoeae MS11

43.353

100

0.436
  ssbA Bacillus subtilis subsp. subtilis str. 168

34.615

100

0.366