Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   JR311_RS13655 Genome accession   NZ_CP069391
Coordinates   2811459..2812211 (-) Length   250 a.a.
NCBI ID   WP_204529821.1    Uniprot ID   -
Organism   Bacillus velezensis strain Sam8H1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2806459..2817211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR311_RS13630 (JR311_13630) mreC 2806895..2807758 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  JR311_RS13635 (JR311_13635) mreB 2807789..2808802 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  JR311_RS13640 (JR311_13640) radC 2808894..2809589 (-) 696 WP_007408165.1 RadC family protein -
  JR311_RS13645 (JR311_13645) - 2809621..2810190 (-) 570 WP_070082167.1 Maf family protein -
  JR311_RS13650 (JR311_13650) - 2810331..2811332 (-) 1002 WP_204529820.1 SPOR domain-containing protein -
  JR311_RS13655 (JR311_13655) comC 2811459..2812211 (-) 753 WP_204529821.1 prepilin peptidase Machinery gene
  JR311_RS13660 (JR311_13660) - 2812351..2813643 (-) 1293 WP_204529822.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  JR311_RS13665 (JR311_13665) - 2813702..2816344 (-) 2643 WP_070082171.1 valine--tRNA ligase -
  JR311_RS13670 (JR311_13670) - 2816797..2816988 (+) 192 WP_060674742.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27146.88 Da        Isoelectric Point: 9.2521

>NTDB_id=534392 JR311_RS13655 WP_204529821.1 2811459..2812211(-) (comC) [Bacillus velezensis strain Sam8H1]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRLACSFCGLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=534392 JR311_RS13655 WP_204529821.1 2811459..2812211(-) (comC) [Bacillus velezensis strain Sam8H1]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTTAGCCTGCTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCTGTTTGCGGATTTTTTCTGCTAGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGAGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.065

99.2

0.576