Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   JRU67_RS07130 Genome accession   NZ_CP069389
Coordinates   1404091..1404357 (+) Length   88 a.a.
NCBI ID   WP_103361428.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain GDQ20D70P     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1399091..1409357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRU67_RS07110 (JRU67_07110) - 1399680..1400821 (+) 1142 WP_198052125.1 IS3 family transposase -
  JRU67_RS07115 (JRU67_07115) - 1400994..1402538 (+) 1545 WP_204218651.1 IS3 family transposase -
  JRU67_RS07120 (JRU67_07120) - 1402828..1403325 (-) 498 WP_103361430.1 ATP-binding protein -
  JRU67_RS07125 (JRU67_07125) - 1403414..1403824 (-) 411 WP_107566174.1 YolD-like family protein -
  JRU67_RS07130 (JRU67_07130) comGC 1404091..1404357 (+) 267 WP_103361428.1 competence type IV pilus major pilin ComGC Machinery gene
  JRU67_RS15180 - 1404335..1404553 (+) 219 WP_258028094.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  JRU67_RS07140 (JRU67_07140) - 1404717..1405049 (+) 333 WP_232339591.1 hypothetical protein -
  JRU67_RS07145 (JRU67_07145) comGF 1405024..1405458 (+) 435 WP_103361426.1 competence type IV pilus minor pilin ComGF -
  JRU67_RS07150 (JRU67_07150) - 1405693..1406181 (+) 489 WP_037588260.1 shikimate kinase -
  JRU67_RS07155 (JRU67_07155) gcvT 1406374..1407462 (+) 1089 WP_103361425.1 glycine cleavage system aminomethyltransferase GcvT -
  JRU67_RS07160 (JRU67_07160) gcvPA 1407474..1408817 (+) 1344 WP_103361424.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9521.12 Da        Isoelectric Point: 6.4425

>NTDB_id=534321 JRU67_RS07130 WP_103361428.1 1404091..1404357(+) (comGC) [Mammaliicoccus sciuri strain GDQ20D70P]
MLIVLLIISILLVIIIPNISKQSETVKSTGCQAQVKMVAGQVEAYTLKHDAKPNSINDLVSDGYINQKQLTCKSGETITL
ENGEVVAH

Nucleotide


Download         Length: 267 bp        

>NTDB_id=534321 JRU67_RS07130 WP_103361428.1 1404091..1404357(+) (comGC) [Mammaliicoccus sciuri strain GDQ20D70P]
ATGTTAATAGTTCTTCTAATAATAAGTATATTATTGGTGATCATCATACCAAACATTAGCAAGCAATCAGAGACGGTAAA
AAGTACTGGATGTCAGGCTCAAGTGAAGATGGTTGCTGGACAAGTAGAAGCTTATACATTGAAGCACGATGCTAAACCAA
ATTCTATAAATGATTTAGTAAGTGATGGTTATATTAATCAAAAGCAACTGACATGTAAATCAGGTGAAACAATTACACTT
GAAAATGGTGAAGTTGTTGCACATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

62.5

81.818

0.511
  comGC Staphylococcus aureus N315

62.5

81.818

0.511
  comGC Bacillus subtilis subsp. subtilis str. 168

44.706

96.591

0.432
  comYC Streptococcus mutans UA140

50

79.545

0.398
  comYC Streptococcus mutans UA159

50

79.545

0.398
  comYC Streptococcus gordonii str. Challis substr. CH1

47.826

78.409

0.375
  comGC Lactococcus lactis subsp. cremoris KW2

45.833

81.818

0.375