Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MASE_RS19355 Genome accession   NC_018632
Coordinates   4554132..4555646 (+) Length   504 a.a.
NCBI ID   WP_014951394.1    Uniprot ID   -
Organism   Alteromonas macleodii ATCC 27126     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4549132..4560646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MASE_RS19340 (MASE_19370) ilvA 4549445..4551001 (-) 1557 WP_014951391.1 threonine ammonia-lyase, biosynthetic -
  MASE_RS19345 (MASE_19375) ilvD 4551001..4552851 (-) 1851 WP_014951392.1 dihydroxy-acid dehydratase -
  MASE_RS19350 (MASE_19380) - 4553294..4553911 (+) 618 WP_014951393.1 trimeric intracellular cation channel family protein -
  MASE_RS19355 (MASE_19385) comM 4554132..4555646 (+) 1515 WP_014951394.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MASE_RS19360 (MASE_19390) ilvY 4555667..4556539 (-) 873 WP_014951395.1 HTH-type transcriptional activator IlvY -
  MASE_RS19365 (MASE_19395) ilvC 4556697..4558175 (+) 1479 WP_014951396.1 ketol-acid reductoisomerase -
  MASE_RS19370 (MASE_19400) - 4558309..4559556 (-) 1248 WP_187289704.1 multidrug effflux MFS transporter -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54164.74 Da        Isoelectric Point: 6.2665

>NTDB_id=53429 MASE_RS19355 WP_014951394.1 4554132..4555646(+) (comM) [Alteromonas macleodii ATCC 27126]
MGMAVVKTFAGQGVAAPEVSVEIHLANGLPAFQLVGMAETSVKEARERVRSALINSGFEFPAKRITVNLAPADIPKFGGR
FDLPIAVGILAASGYISDISLLNIAFVGELALNGEIKPVNGLIPVVMAAEHEDIALVYPGDNDVEAALVSHATRYPAFDL
QSVYEHLSGNKKLAKGQPFTSRALNSPLSGWDDIIGQEQAKRALVIAASGAHNLLMVGPPGTGKSLLASRMLSLLPDMSE
EEALEVAAIHSVKGEKLHAERFLTRHLRSPHHTSSAVALTGGGSNPVPGEISLAHNGILFLDELPEFGRKALDVLREPLE
TGDVHLSRASGSATYPANFQLVAAMNPSPTGDIDDNRLTPQQQLNYLNRLSGPLLDRIDIQVEVPRLPDYDLPERANRSD
DSIHATRERVIAARHKQGLRQGKPNGALHAGELADICLLDDADLQFLQAAAKQLNLSMRVFHRTLKVARTIADLEEQNAV
SRAHIAEALGYRALDNLIKQLSTS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=53429 MASE_RS19355 WP_014951394.1 4554132..4555646(+) (comM) [Alteromonas macleodii ATCC 27126]
ATGGGAATGGCTGTTGTTAAAACCTTTGCAGGGCAGGGCGTGGCAGCGCCAGAGGTAAGTGTAGAGATTCACCTAGCTAA
TGGATTACCTGCTTTTCAACTGGTCGGTATGGCAGAAACCAGCGTTAAAGAAGCGCGAGAAAGAGTACGCAGTGCCCTGA
TAAACAGTGGTTTTGAGTTTCCCGCAAAACGAATAACCGTCAATTTAGCGCCGGCAGATATTCCCAAGTTTGGCGGGCGG
TTCGACCTTCCCATCGCCGTAGGCATTTTAGCTGCGTCGGGCTACATCTCAGACATTAGCCTGCTCAACATTGCCTTTGT
GGGCGAGCTTGCATTAAACGGCGAAATAAAGCCAGTAAACGGGCTTATTCCTGTGGTAATGGCAGCTGAACACGAAGACA
TTGCGCTCGTATACCCGGGTGATAATGACGTAGAGGCTGCATTGGTTTCTCACGCAACACGCTATCCTGCTTTCGATTTA
CAGTCTGTTTATGAACACCTTTCCGGCAACAAAAAACTTGCTAAAGGCCAACCGTTTACCTCGCGAGCACTTAACAGTCC
CCTTTCAGGGTGGGATGACATTATCGGCCAAGAGCAGGCCAAACGAGCGCTTGTTATCGCAGCAAGTGGAGCACACAATT
TACTTATGGTGGGGCCTCCTGGCACAGGTAAAAGCCTGCTCGCCAGCCGAATGCTATCGCTATTACCCGATATGAGCGAG
GAAGAAGCGTTGGAAGTGGCAGCCATTCACTCTGTGAAAGGCGAAAAACTGCATGCAGAGCGTTTTTTAACCCGCCACTT
GCGTTCGCCCCACCATACTAGCTCTGCGGTGGCACTTACTGGCGGCGGCTCTAACCCAGTGCCAGGTGAAATATCGCTGG
CTCATAATGGTATTTTGTTTCTAGACGAACTGCCTGAATTTGGGCGAAAAGCACTGGATGTATTGCGCGAGCCACTTGAA
ACCGGCGACGTGCATTTGTCTCGTGCTTCAGGAAGCGCCACATACCCCGCTAACTTTCAATTAGTAGCGGCAATGAACCC
AAGCCCGACAGGTGACATTGATGATAACCGACTAACCCCGCAGCAACAGCTCAACTACTTGAACCGATTATCGGGCCCAC
TGCTTGACAGAATTGATATACAAGTCGAAGTGCCGCGGCTACCTGACTACGACCTGCCAGAGCGTGCCAATAGATCTGAC
GACTCGATACACGCAACGCGAGAGCGGGTCATTGCAGCGCGTCACAAACAAGGGCTACGGCAAGGTAAGCCAAATGGGGC
GCTGCACGCGGGTGAGCTTGCCGATATATGCTTACTTGATGACGCTGATTTGCAGTTTTTACAAGCCGCTGCTAAACAGC
TTAATTTGTCTATGCGGGTATTTCATCGCACGTTAAAAGTGGCAAGAACCATTGCTGACCTTGAAGAGCAAAACGCTGTA
TCGCGGGCGCACATTGCAGAAGCATTGGGCTATCGCGCCCTCGATAACCTTATTAAACAGTTGAGCACTAGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-137)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-388)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.968

100

0.54
  comM Vibrio campbellii strain DS40M4

53.175

100

0.532
  comM Haemophilus influenzae Rd KW20

51.373

100

0.52
  comM Glaesserella parasuis strain SC1401

51.779

100

0.52
  comM Legionella pneumophila str. Paris

46.169

98.413

0.454
  comM Legionella pneumophila strain ERS1305867

46.169

98.413

0.454
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.435

Multiple sequence alignment