Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   LB316_RS00165 Genome accession   NZ_CP084107
Coordinates   39211..39624 (+) Length   137 a.a.
NCBI ID   WP_000998780.1    Uniprot ID   C1PH97
Organism   Staphylococcus aureus strain CC49/ST49-MSSA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 34211..44624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB316_RS00135 (LB316_00135) - 34213..35499 (+) 1287 WP_000513494.1 SIR2 family protein -
  LB316_RS00140 (LB316_00140) - 35505..36773 (+) 1269 WP_229375461.1 DUF87 domain-containing protein -
  LB316_RS00145 (LB316_00145) - 36770..37192 (+) 423 WP_223846063.1 ATP-binding protein -
  LB316_RS00150 (LB316_00150) - 37353..37490 (+) 138 WP_021758025.1 hypothetical protein -
  LB316_RS00155 (LB316_00155) - 37753..38364 (+) 612 WP_000856594.1 hypothetical protein -
  LB316_RS00160 (LB316_00160) - 38703..39110 (-) 408 WP_029753337.1 hypothetical protein -
  LB316_RS00165 (LB316_00165) lrpC 39211..39624 (+) 414 WP_000998780.1 Lrp/AsnC family transcriptional regulator Machinery gene
  LB316_RS00170 (LB316_00170) - 39686..40159 (+) 474 WP_000455980.1 GNAT family N-acetyltransferase -
  LB316_RS00175 (LB316_00175) - 40267..41253 (-) 987 WP_000662031.1 tRNA-dihydrouridine synthase -
  LB316_RS00180 (LB316_00180) - 41561..41764 (+) 204 WP_000389759.1 DUF6007 family protein -
  LB316_RS00185 (LB316_00185) - 41813..42109 (+) 297 WP_000179901.1 TfoX/Sxy family protein -
  LB316_RS00190 (LB316_00190) - 42171..43391 (-) 1221 WP_000130756.1 MFS transporter -
  LB316_RS00195 (LB316_00195) - 43384..43935 (-) 552 WP_000627023.1 flavodoxin family protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15971.29 Da        Isoelectric Point: 4.6692

>NTDB_id=534238 LB316_RS00165 WP_000998780.1 39211..39624(+) (lrpC) [Staphylococcus aureus strain CC49/ST49-MSSA]
MNDLINEKIINVLLNNSRITINELSKQVNLSAPAVRERVNKLEDQGIIKGYTINIDYKELGYDVEILIELTIKNNRYKDF
KEFISKQDNVEFCYRVSGEACFVFKVRLENMDEVETFVDTIQPYGQTKCQFIFSSVV

Nucleotide


Download         Length: 414 bp        

>NTDB_id=534238 LB316_RS00165 WP_000998780.1 39211..39624(+) (lrpC) [Staphylococcus aureus strain CC49/ST49-MSSA]
ATGAATGACTTAATAAATGAAAAAATAATCAATGTTTTGTTAAATAATAGTAGAATTACTATTAATGAATTAAGTAAACA
AGTGAACTTATCTGCTCCAGCTGTAAGAGAAAGGGTAAATAAACTTGAAGATCAAGGTATTATAAAAGGTTATACAATTA
ACATAGATTATAAGGAATTAGGTTACGATGTAGAAATATTAATTGAGTTAACTATAAAGAATAATAGATACAAAGATTTT
AAAGAATTTATTTCAAAACAAGATAATGTTGAGTTTTGTTATCGTGTATCAGGAGAGGCATGTTTTGTATTTAAGGTTCG
GTTGGAAAATATGGATGAAGTGGAAACATTTGTTGATACCATACAACCATATGGGCAGACAAAATGTCAGTTTATCTTTT
CATCAGTTGTCTAA

Domains

Predicted by InterProScan.

Winged helix-turn-helix DNA-binding (HTH_24)

(3-49)

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(68-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1PH97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

43.284

97.81

0.423