Detailed information NTG0534120

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: JM642_RS18755
• Genome accession: NZ_CP069350
• Coordinates: 4274977..4276503 (+)
• Length: 508 a.a.
• NCBI ID: WP_203432337.1
• Uniprot ID: -
• Organism: Shewanella sp. LZH-2
• Function: require for natural transformation (predicted from homology) Unclear

Genomic Context

Location: 4269977..4281503

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JM642_RS18730 (JM642_18730)	-	4270042..4270992 (+)	951	WP_069453779.1	calcium/sodium antiporter	-
JM642_RS18735 (JM642_18735)	-	4271176..4271880 (+)	705	WP_203432334.1	hypothetical protein	-
JM642_RS18740 (JM642_18740)	-	4271965..4273044 (+)	1080	WP_203432335.1	sensor histidine kinase	-
JM642_RS18745 (JM642_18745)	-	4273044..4273640 (+)	597	WP_037413708.1	response regulator transcription factor	-
JM642_RS18750 (JM642_18750)	-	4273646..4274761 (-)	1116	WP_203432336.1	DUF1963 domain-containing protein	-
JM642_RS18755 (JM642_18755)	comM	4274977..4276503 (+)	1527	WP_203432337.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
JM642_RS18760 (JM642_18760)	-	4276604..4277506 (+)	903	WP_037413712.1	acyltransferase	-
JM642_RS18765 (JM642_18765)	-	4277514..4278455 (+)	942	WP_037431237.1	acyltransferase	-
JM642_RS18770 (JM642_18770)	-	4278524..4278988 (-)	465	WP_203432338.1	DUF523 domain-containing protein	-
JM642_RS18775 (JM642_18775)	-	4279323..4280111 (+)	789	WP_037431231.1	GntR family transcriptional regulator	-
JM642_RS18780 (JM642_18780)	prpB	4280176..4281054 (+)	879	WP_203432339.1	methylisocitrate lyase	-

Sequence

Protein

• Length: 508 a.a.
• Molecular weight: 55308.82 Da
• Isoelectric Point: 7.9847

>NTDB_id=534120 JM642_RS18755 WP_203432337.1 4274977..4276503(+) (comM) [Shewanella sp. LZH-2]
MAIACVHTRASCGVEAPEVTVEVHLSNGLPAFNLVGLPEASVKEARERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAIGILAASEQIPATSLKDTEFVGELALSGQIRHCQGLLPAIIAAKRHNNQLILPLENRHDAELVGYPKVYFGSHL
QSLAAFLHGQAPLPMLEQQLEWISNEPVESAPCLSEVIGQYQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRMMALLPT
LNYEEALEVAAIHSVAGINIKPQDFLKRPFRAPHHTCSSISLVGGGSIPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFLSRFQLIAAMNPSPSGDIDGPNRATPDQIQRYLARLSGPFIDRFDLTIEVPKLPAGTLTQQS
TQGETSHQIAKRVKCARDIQLARAGVLNSELSGKQLKQFSGINEADLVFLEQSVVKLGLSVRSFHRIQRVARTIADLEQA
PNTERRHLAQALGYRAMDKLLARLSQQY

Nucleotide

• Length: 1527 bp

>NTDB_id=534120 JM642_RS18755 WP_203432337.1 4274977..4276503(+) (comM) [Shewanella sp. LZH-2]
ATGGCGATAGCCTGTGTACATACCCGAGCCAGTTGTGGTGTTGAAGCTCCAGAAGTCACGGTTGAAGTCCATCTCAGTAA
TGGCCTACCCGCCTTTAATCTGGTGGGTTTGCCAGAAGCCTCAGTCAAAGAAGCCCGTGAGCGGGTGCGCAGTGCCCTGA
TCAATGCGGGATTCGAGTTTCCGATGCGCCGGATAACCGTCAATCTCGCCCCCGCAGATTTACCCAAACAGGGCGGCCGT
TACGATTTGCCTATCGCCATCGGCATTCTAGCCGCGTCAGAGCAAATCCCCGCCACGAGCCTTAAGGATACTGAATTTGT
CGGCGAACTTGCCCTCTCAGGGCAAATCCGCCACTGCCAAGGACTGCTGCCTGCGATCATTGCGGCTAAACGCCATAATA
ATCAGTTAATTCTGCCCCTCGAGAATCGCCACGACGCTGAGTTAGTTGGCTACCCTAAGGTCTACTTTGGCTCCCATTTG
CAAAGTTTAGCGGCCTTTCTCCATGGACAAGCGCCACTCCCCATGCTGGAGCAGCAGCTCGAATGGATCTCGAATGAGCC
AGTGGAATCCGCACCTTGCCTTAGCGAGGTGATAGGTCAATACCAAGCTAAACAAGCACTTGAAATCGCTGCCGCAGGCA
ACCATAACCTATTGATGTTAGGCCCGCCTGGTACTGGCAAAACTATGTTAGCCAGTCGCATGATGGCGCTATTACCGACA
CTCAATTATGAAGAGGCCTTAGAAGTCGCTGCAATTCATTCAGTAGCGGGCATCAATATCAAACCTCAGGATTTTCTTAA
GCGGCCATTTCGTGCGCCGCACCATACTTGCTCCTCTATTTCCTTAGTCGGTGGCGGCAGCATTCCTAAGCCAGGCGAAA
TTTCATTGGCCCATCGCGGAGTATTATTTCTGGATGAAGTCGCTGAATTTCCAAGAAAAGTGCTCGACTGTTTGCGTGAA
CCGATGGAAACAGGTGAAGTGGTGATCTCCCGCGCGGCGGCAAAACTGACCTTTTTAAGTCGCTTTCAATTGATCGCCGC
CATGAACCCCAGCCCGAGCGGCGATATCGACGGCCCCAATCGAGCTACACCCGATCAAATCCAGCGCTATCTCGCCAGAC
TCTCTGGCCCGTTTATTGATAGATTTGATCTCACCATCGAAGTCCCCAAACTCCCCGCAGGCACCCTAACGCAACAGTCG
ACGCAAGGCGAAACCAGCCATCAAATAGCCAAACGAGTAAAATGCGCCCGCGATATTCAACTCGCCAGAGCGGGCGTGCT
TAACAGCGAACTATCAGGTAAACAACTTAAGCAATTTAGTGGTATCAATGAGGCTGACCTAGTTTTTTTAGAACAGAGTG
TCGTCAAGTTAGGATTATCCGTGCGCAGCTTTCATCGTATTCAACGGGTTGCCCGCACCATTGCCGACCTTGAGCAGGCC
CCCAATACCGAAAGACGCCACCTCGCCCAAGCCTTAGGATATAGGGCTATGGATAAATTATTGGCCCGTTTATCCCAACA
GTATTGA

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (194-393)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (403-495)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Haemophilus influenzae Rd KW20	56.607	99.803	0.565
comM	Vibrio cholerae strain A1552	56.102	100	0.561
comM	Glaesserella parasuis strain SC1401	56.016	99.803	0.559
comM	Vibrio campbellii strain DS40M4	54.921	100	0.549
comM	Legionella pneumophila str. Paris	46.85	100	0.469
comM	Legionella pneumophila strain ERS1305867	46.85	100	0.469
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	43.936	99.016	0.435