Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JQX13_RS23680 Genome accession   NZ_CP069338
Coordinates   5526157..5526666 (+) Length   169 a.a.
NCBI ID   WP_203411192.1    Uniprot ID   -
Organism   Archangium violaceum strain SDU34     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5521157..5531666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQX13_RS23660 (JQX13_23660) - 5521523..5521663 (+) 141 WP_203411189.1 hypothetical protein -
  JQX13_RS23665 (JQX13_23665) - 5521700..5522620 (+) 921 WP_203411190.1 hypothetical protein -
  JQX13_RS23670 (JQX13_23670) - 5522713..5523504 (+) 792 WP_203411191.1 SDR family oxidoreductase -
  JQX13_RS23675 (JQX13_23675) dacB 5523729..5525969 (+) 2241 WP_203412180.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  JQX13_RS23680 (JQX13_23680) ssb 5526157..5526666 (+) 510 WP_203411192.1 single-stranded DNA-binding protein Machinery gene
  JQX13_RS23685 (JQX13_23685) - 5526768..5527484 (-) 717 WP_203411193.1 succinate dehydrogenase -
  JQX13_RS23690 (JQX13_23690) - 5527740..5528639 (+) 900 WP_203411194.1 Hsp33 family molecular chaperone HslO -
  JQX13_RS23695 (JQX13_23695) - 5528696..5529406 (+) 711 WP_203411195.1 phosphoribosyltransferase -
  JQX13_RS23700 (JQX13_23700) selB 5529429..5531345 (+) 1917 WP_203411196.1 selenocysteine-specific translation elongation factor -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 17729.41 Da        Isoelectric Point: 5.2866

>NTDB_id=534068 JQX13_RS23680 WP_203411192.1 5526157..5526666(+) (ssb) [Archangium violaceum strain SDU34]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSDTWTDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCYVEG
RLQTREWTDKENRKNYTTEVVANAVTFLGGRDGAGAGGGGGGGGRGYSQQRGGGQQQGGGGYDDYGPPPMGMDEGGGGGN
GGGDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=534068 JQX13_RS23680 WP_203411192.1 5526157..5526666(+) (ssb) [Archangium violaceum strain SDU34]
ATGGCTGGAGGAGTCAACAAGGTCATCCTCATCGGCAACCTCGGCGCGGACCCGGAGGTGCGCTTCACCCCGGGTGGCCA
GGCGGTCGCCAACTTCCGCATCGCGACCAGCGATACCTGGACCGACAAGAACGGCCAGAAGCAGGAGCGCACGGAGTGGC
ACCGCATCGTCGTGTGGGGGAAGCTCGCGGAGCTCTGCGGCGAGTACCTGAAGAAGGGCCGCCAGTGCTACGTCGAGGGT
CGCCTGCAGACGCGCGAGTGGACGGACAAGGAGAACAGGAAGAACTACACCACCGAGGTGGTGGCCAACGCGGTGACCTT
CCTGGGCGGCCGTGACGGCGCCGGAGCGGGCGGCGGCGGTGGCGGTGGTGGCCGCGGCTACTCGCAGCAGCGCGGCGGGG
GCCAGCAGCAGGGCGGCGGCGGGTACGACGACTACGGCCCTCCCCCGATGGGCATGGACGAGGGCGGTGGCGGTGGCAAC
GGCGGCGGGGACGACGACATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.739

100

0.509
  ssb Neisseria meningitidis MC58

44.253

100

0.456
  ssb Neisseria gonorrhoeae MS11

44.253

100

0.456
  ssb Glaesserella parasuis strain SC1401

39.785

100

0.438
  ssbA Bacillus subtilis subsp. subtilis str. 168

33.889

100

0.361