Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JQC68_RS05215 Genome accession   NZ_CP069308
Coordinates   1011378..1011875 (+) Length   165 a.a.
NCBI ID   WP_203399299.1    Uniprot ID   -
Organism   Glaesserella parasuis strain EHP1804     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1006378..1016875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQC68_RS05205 (JQC68_05200) - 1007783..1008163 (-) 381 WP_010786782.1 YacL family protein -
  JQC68_RS05210 (JQC68_05205) uvrA 1008247..1011075 (-) 2829 WP_203399298.1 excinuclease ABC subunit UvrA -
  JQC68_RS05215 (JQC68_05210) ssb 1011378..1011875 (+) 498 WP_203399299.1 single-stranded DNA-binding protein Machinery gene
  JQC68_RS05220 (JQC68_05215) - 1012083..1013294 (+) 1212 WP_203399300.1 ATP-binding protein -
  JQC68_RS12285 - 1013356..1016064 (+) 2709 WP_043896222.1 ATP-dependent DNA helicase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18209.09 Da        Isoelectric Point: 5.2691

>NTDB_id=533467 JQC68_RS05215 WP_203399299.1 1011378..1011875(+) (ssb) [Glaesserella parasuis strain EHP1804]
MAGVNKVIIVGNLGNDPDMRTMPNGDAVATLSVATSESWNDKMTGERREVTEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSSGGDFGGNQGGGWNQAPAQTNFNGGNATRPQPAQKPAAQAEPTMDNFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=533467 JQC68_RS05215 WP_203399299.1 1011378..1011875(+) (ssb) [Glaesserella parasuis strain EHP1804]
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAATGACCCAGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGCGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAGGTCACCGAATGGC
ACCGTATCGTTTTCTTCCGTCGTCAAGCAGAAGTAGCAGGACAATACTTACGCAAAGGTTCAAAAGTCTATGTAGAAGGC
AAGCTCAAAACACGCAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTACTACAAAT
GTTAGACAGCCGTAGCAGTGGCGGTGATTTTGGCGGAAATCAAGGTGGTGGCTGGAACCAAGCACCAGCGCAAACCAACT
TCAACGGAGGCAACGCAACCAGACCGCAACCAGCCCAAAAACCTGCGGCTCAAGCAGAACCAACAATGGATAATTTTGAT
GATGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

90.556

100

0.988
  ssb Vibrio cholerae strain A1552

54.237

100

0.582
  ssb Neisseria gonorrhoeae MS11

44.509

100

0.467
  ssb Neisseria meningitidis MC58

43.931

100

0.461
  ssb Latilactobacillus sakei subsp. sakei 23K

34.659

100

0.37