Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   JQC68_RS02900 Genome accession   NZ_CP069308
Coordinates   519612..520070 (-) Length   152 a.a.
NCBI ID   WP_203399226.1    Uniprot ID   K4JWY2
Organism   Glaesserella parasuis strain EHP1804     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 514612..525070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQC68_RS02880 (JQC68_02880) dapE 515108..516241 (-) 1134 WP_160436358.1 succinyl-diaminopimelate desuccinylase -
  JQC68_RS02885 (JQC68_02885) - 516325..516993 (-) 669 WP_035491631.1 prepilin peptidase -
  JQC68_RS02890 (JQC68_02890) pilC 516990..518186 (-) 1197 WP_203399224.1 type II secretion system F family protein Machinery gene
  JQC68_RS02895 (JQC68_02895) pilB 518179..519564 (-) 1386 WP_203399225.1 GspE/PulE family protein Machinery gene
  JQC68_RS02900 (JQC68_02900) pilA 519612..520070 (-) 459 WP_203399226.1 pilin Machinery gene
  JQC68_RS02905 (JQC68_02905) radA 520258..521634 (+) 1377 WP_005711784.1 DNA repair protein RadA -
  JQC68_RS02910 (JQC68_02910) gmk 521687..522313 (-) 627 WP_203399227.1 guanylate kinase -
  JQC68_RS02915 (JQC68_02915) gpt 522549..523031 (-) 483 Protein_568 xanthine phosphoribosyltransferase -
  JQC68_RS02920 (JQC68_02920) - 523211..524665 (+) 1455 WP_021114523.1 aminoacyl-histidine dipeptidase -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16092.58 Da        Isoelectric Point: 9.0925

>NTDB_id=533463 JQC68_RS02900 WP_203399226.1 519612..520070(-) (pilA) [Glaesserella parasuis strain EHP1804]
MKKIRLIRPLAKAFTLIELMIVIAIIAILATIAIPSYTSYTQKAALSELLSASASYKSDVEICIYNTGALTNCTGGSNGV
QANKTDVADAKYLKSISVASGTITVEGKSSIDGYGYTMTPKFANNNITWATSCRGSDISLFPANFCGTKATQ

Nucleotide


Download         Length: 459 bp        

>NTDB_id=533463 JQC68_RS02900 WP_203399226.1 519612..520070(-) (pilA) [Glaesserella parasuis strain EHP1804]
ATGAAAAAAATCAGGTTAATTCGACCGCTTGCAAAAGCCTTTACCTTAATTGAGTTGATGATCGTGATCGCCATCATTGC
TATTTTAGCCACGATTGCAATCCCGTCTTACACCAGTTACACCCAAAAGGCTGCACTCTCTGAGTTATTAAGTGCTTCCG
CATCTTATAAATCCGATGTGGAAATTTGTATTTATAACACAGGGGCTTTAACTAACTGTACAGGGGGTTCTAACGGCGTT
CAAGCCAATAAAACCGATGTTGCCGATGCTAAATATCTTAAATCTATTTCCGTCGCTTCGGGGACAATCACCGTAGAAGG
CAAAAGCAGCATTGATGGCTACGGCTACACAATGACCCCGAAATTTGCCAATAACAACATTACTTGGGCAACAAGCTGTC
GAGGTTCTGACATTAGTTTATTCCCTGCGAATTTCTGTGGGACAAAAGCCACACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K4JWY2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Glaesserella parasuis strain SC1401

86.275

100

0.868
  pilA Haemophilus influenzae 86-028NP

56.757

97.368

0.553
  pilA Haemophilus influenzae Rd KW20

56.757

97.368

0.553
  comP Acinetobacter baylyi ADP1

46.094

84.211

0.388