Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JQC68_RS02890 Genome accession   NZ_CP069308
Coordinates   516990..518186 (-) Length   398 a.a.
NCBI ID   WP_203399224.1    Uniprot ID   -
Organism   Glaesserella parasuis strain EHP1804     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 511990..523186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQC68_RS02865 (JQC68_02865) - 512706..513095 (-) 390 WP_010787002.1 SufE family protein -
  JQC68_RS02870 (JQC68_02870) clpP 513196..513777 (+) 582 WP_005711766.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  JQC68_RS02875 (JQC68_02875) clpX 513784..515034 (+) 1251 WP_203399223.1 ATP-dependent protease ATP-binding subunit ClpX -
  JQC68_RS02880 (JQC68_02880) dapE 515108..516241 (-) 1134 WP_160436358.1 succinyl-diaminopimelate desuccinylase -
  JQC68_RS02885 (JQC68_02885) - 516325..516993 (-) 669 WP_035491631.1 prepilin peptidase -
  JQC68_RS02890 (JQC68_02890) pilC 516990..518186 (-) 1197 WP_203399224.1 type II secretion system F family protein Machinery gene
  JQC68_RS02895 (JQC68_02895) pilB 518179..519564 (-) 1386 WP_203399225.1 GspE/PulE family protein Machinery gene
  JQC68_RS02900 (JQC68_02900) pilA 519612..520070 (-) 459 WP_203399226.1 pilin Machinery gene
  JQC68_RS02905 (JQC68_02905) radA 520258..521634 (+) 1377 WP_005711784.1 DNA repair protein RadA -
  JQC68_RS02910 (JQC68_02910) gmk 521687..522313 (-) 627 WP_203399227.1 guanylate kinase -
  JQC68_RS02915 (JQC68_02915) gpt 522549..523031 (-) 483 Protein_568 xanthine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 45743.58 Da        Isoelectric Point: 10.1818

>NTDB_id=533461 JQC68_RS02890 WP_203399224.1 516990..518186(-) (pilC) [Glaesserella parasuis strain EHP1804]
MNNIYEFQWKGRNRFGQKQTGRQLAESREVLEKRLQQKGYSQLRISRHFALPTAPKKEEINQFMQQLALLIQAKIPLKQS
LVMLLETCQNRTFYRWQQETIRLIEAGFALSVAFEKQGKYINPQEIQLIKMAETSGNLGLILTNIAQRREKSEKLAKKIK
KILFYPVFILAISITLSILLLLFIVPQFAELYGSKGKSLPLITEILFSLSHFLQHSILTLIILCVLCFLLIHILNKKTDL
IKRLKFIILSHIPILKGIIQYSRIIFFCQNSSLMLASHIRLDTVLHSFLANKSDDILLQRSLATTLTYLKQGYRLADSLD
PKLFPTDMLQMIAIGEQSGKLSPMLQQISNGYQQRLDYQIDILSQLLEPMLMVLMGIIVGTILVGLYLPIFDMGAMIE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=533461 JQC68_RS02890 WP_203399224.1 516990..518186(-) (pilC) [Glaesserella parasuis strain EHP1804]
ATGAATAACATTTATGAATTTCAATGGAAAGGACGCAACCGCTTTGGACAAAAGCAAACAGGGCGACAGCTTGCCGAAAG
CCGAGAAGTGCTAGAAAAACGCTTGCAACAAAAAGGCTATAGCCAGTTACGCATTAGCCGACATTTTGCCTTGCCGACGG
CACCGAAAAAGGAAGAAATTAATCAATTTATGCAACAGTTGGCATTATTAATTCAAGCCAAAATCCCCCTAAAACAGAGT
TTGGTAATGTTGCTGGAAACTTGCCAAAATCGCACCTTTTACCGTTGGCAACAAGAGACAATCCGCTTGATTGAAGCTGG
CTTTGCCTTATCCGTTGCCTTTGAAAAACAGGGGAAATATATCAATCCACAAGAGATCCAATTAATTAAAATGGCAGAAA
CAAGCGGTAATTTAGGGCTGATTTTAACCAATATTGCACAACGCCGTGAAAAATCGGAAAAATTAGCCAAGAAAATTAAA
AAAATTCTCTTTTATCCCGTCTTTATTTTAGCTATTTCAATCACACTCTCTATTTTATTATTACTTTTTATTGTGCCACA
ATTTGCAGAACTTTATGGCTCAAAAGGAAAATCATTACCTTTAATTACCGAAATACTCTTTAGCCTATCTCATTTTCTAC
AACACTCTATTTTAACGCTAATTATTTTATGTGTGTTATGTTTTCTATTAATTCATATTTTAAATAAAAAAACAGATCTT
ATTAAACGCCTAAAGTTTATTATATTAAGCCATATTCCTATTTTAAAAGGCATTATCCAGTATTCACGCATTATCTTTTT
TTGTCAAAATAGCAGTTTAATGCTGGCTTCACATATTCGTTTAGATACTGTACTTCATTCCTTTTTAGCCAATAAAAGTG
ATGATATTTTATTACAACGTTCTCTAGCAACTACACTAACTTATTTAAAACAAGGTTATCGTTTAGCCGACAGTTTAGAT
CCAAAACTCTTTCCTACGGATATGTTACAGATGATTGCCATTGGCGAGCAGAGCGGAAAATTATCGCCAATGTTGCAACA
AATCAGCAACGGTTATCAACAGCGGTTAGATTATCAAATTGATATACTTTCCCAATTATTAGAGCCGATGTTAATGGTGT
TAATGGGAATTATTGTAGGAACTATTTTAGTCGGTTTGTATTTGCCGATTTTTGATATGGGAGCAATGATAGAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-186)

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

98.995

100

0.99
  pilC Haemophilus influenzae Rd KW20

38.404

100

0.387
  pilC Haemophilus influenzae 86-028NP

38.155

100

0.384