Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JNO62_RS15375 Genome accession   NZ_CP069245
Coordinates   3310874..3311419 (-) Length   181 a.a.
NCBI ID   WP_071011597.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain PeaFJ1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 3310199..3310498 3310874..3311419 flank 376


Gene organization within MGE regions


Location: 3310199..3311419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNO62_RS15370 - 3310271..3310704 (-) 434 Protein_3012 transposase -
  JNO62_RS15375 (JNO62_15280) ssb 3310874..3311419 (-) 546 WP_071011597.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 18868.69 Da        Isoelectric Point: 5.9786

>NTDB_id=533155 JNO62_RS15375 WP_071011597.1 3310874..3311419(-) (ssb) [Ralstonia pseudosolanacearum strain PeaFJ1]
MASVNKVIIVGNLGADPETRYMPSGDAVTNIRVATTDRYKDKASGEMREATEWHRIAFFGRLAEIAGEYLKKGSQVYVEG
RLKTRQWEKDGQKQYSTEIVAEQMQMLGSRQGMGGEGGGGGGGGGGYSRGESSGGGGYGGGRAQGGGGMSRGEGGGGQGG
GARRQQAPSNGFEDMDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=533155 JNO62_RS15375 WP_071011597.1 3310874..3311419(-) (ssb) [Ralstonia pseudosolanacearum strain PeaFJ1]
ATGGCGTCCGTCAACAAAGTCATCATCGTCGGCAATCTCGGCGCCGATCCCGAAACGCGTTACATGCCGAGCGGCGACGC
CGTCACCAATATCCGCGTGGCGACCACCGACCGCTACAAGGACAAGGCCAGCGGCGAAATGCGCGAGGCCACCGAGTGGC
ACCGCATCGCCTTCTTCGGCCGCCTGGCCGAAATTGCCGGCGAATACCTGAAGAAGGGTTCGCAGGTCTACGTCGAAGGC
CGCCTCAAGACCCGCCAGTGGGAGAAGGACGGCCAGAAACAGTACAGCACCGAAATCGTCGCCGAGCAGATGCAGATGCT
CGGCAGCCGCCAGGGCATGGGCGGCGAGGGCGGTGGCGGTGGCGGCGGCGGTGGTGGCTACTCGCGCGGCGAATCGTCGG
GAGGTGGCGGTTACGGCGGTGGCCGTGCCCAGGGCGGCGGCGGTATGAGCCGCGGCGAAGGCGGTGGTGGTCAAGGCGGC
GGCGCGCGCCGTCAGCAGGCGCCTTCGAATGGGTTTGAGGATATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.733

100

0.514
  ssb Vibrio cholerae strain A1552

46.277

100

0.481
  ssb Neisseria gonorrhoeae MS11

42.541

100

0.425
  ssb Neisseria meningitidis MC58

42.541

100

0.425
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.017

100

0.37