Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   LA346_RS08590 Genome accession   NZ_CP083627
Coordinates   1649239..1649913 (+) Length   224 a.a.
NCBI ID   WP_000590640.1    Uniprot ID   P0A4H7
Organism   Streptococcus pneumoniae strain FDAARGOS_1508     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1644239..1654913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA346_RS08575 (LA346_08575) - 1644599..1645039 (+) 441 WP_001812925.1 ASCH domain-containing protein -
  LA346_RS08580 (LA346_08580) - 1645162..1647708 (+) 2547 WP_001149111.1 M1 family metallopeptidase -
  LA346_RS08585 (LA346_08585) - 1647787..1649043 (-) 1257 WP_000530081.1 ISL3 family transposase -
  LA346_RS08590 (LA346_08590) ciaR 1649239..1649913 (+) 675 WP_000590640.1 two-component system response regulator CiaR Regulator
  LA346_RS08595 (LA346_08595) ciaH 1649903..1651237 (+) 1335 WP_000491795.1 two-component system sensor histidine kinase CiaH Regulator
  LA346_RS08600 (LA346_08600) - 1651271..1651558 (-) 288 WP_001145225.1 DUF3270 domain-containing protein -
  LA346_RS08605 (LA346_08605) - 1651698..1652627 (+) 930 WP_000411847.1 peptidase U32 family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25466.29 Da        Isoelectric Point: 4.3283

>NTDB_id=532964 LA346_RS08590 WP_000590640.1 1649239..1649913(+) (ciaR) [Streptococcus pneumoniae strain FDAARGOS_1508]
MIKILLVEDDLGLSNSVFDFLDDFADVMQVFDGEEGLYEAESGVYDLILLDLMLPEKNGFQVLKELREKGITTPVLIMTA
KESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLTYGNIVVNLSTNTVKVEDTPVELLGKEFDLLVY
FLQNQNVILPKTQIFDRLWGFDSDTTISVVEVYVSKVRKKLKGTTFAENLQTLRSVGYLLKDVQ

Nucleotide


Download         Length: 675 bp        

>NTDB_id=532964 LA346_RS08590 WP_000590640.1 1649239..1649913(+) (ciaR) [Streptococcus pneumoniae strain FDAARGOS_1508]
ATGATAAAAATCTTATTGGTTGAGGATGACCTAGGTCTGTCAAATTCAGTATTTGACTTTTTAGACGATTTTGCGGATGT
TATGCAGGTATTTGATGGAGAAGAAGGTCTCTACGAAGCTGAGAGTGGTGTCTATGACTTGATTTTGCTGGATTTGATGT
TGCCAGAAAAAAATGGTTTCCAAGTCTTAAAAGAATTGCGTGAAAAGGGAATTACGACACCAGTTCTGATTATGACTGCC
AAGGAAAGTTTGGATGACAAGGGACATGGATTTGAACTGGGAGCGGATGATTATCTGACCAAACCTTTCTACCTAGAAGA
ACTTAAAATGCGGATTCAGGCCCTTCTCAAACGTTCAGGGAAGTTTAATGAAAACACCTTGACTTATGGGAATATCGTGG
TTAATTTATCAACCAATACCGTTAAAGTTGAAGATACTCCTGTCGAATTGCTGGGGAAAGAGTTCGATTTACTAGTTTAT
TTCCTTCAAAATCAAAATGTGATTTTGCCTAAGACGCAGATTTTTGACCGTCTATGGGGATTTGATAGTGATACAACGAT
TTCGGTTGTCGAAGTCTATGTTTCAAAAGTCCGTAAGAAATTAAAGGGAACCACTTTTGCAGAGAATTTGCAAACCTTGC
GTAGTGTTGGGTATCTTTTAAAAGATGTTCAGTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-220)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A4H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

100

100

1
  ciaR Streptococcus pneumoniae D39

100

100

1
  ciaR Streptococcus pneumoniae R6

100

100

1
  ciaR Streptococcus pneumoniae TIGR4

100

100

1
  ciaR Streptococcus mutans UA159

88.393

100

0.884
  covR Lactococcus lactis subsp. lactis strain DGCC12653

36.726

100

0.371
  vicR Streptococcus mutans UA159

35.622

100

0.371