Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JQC75_RS16890 Genome accession   NZ_CP069213
Coordinates   3826538..3828064 (+) Length   508 a.a.
NCBI ID   WP_203325177.1    Uniprot ID   -
Organism   Shewanella litorisediminis strain SMK1-12     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3821538..3833064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQC75_RS16875 (JQC75_16875) - 3822543..3823346 (+) 804 WP_203325174.1 substrate-binding periplasmic protein -
  JQC75_RS16880 (JQC75_16880) - 3823433..3825262 (-) 1830 WP_203325175.1 sensor domain-containing diguanylate cyclase -
  JQC75_RS16885 (JQC75_16885) - 3825305..3826318 (-) 1014 WP_203325176.1 ABC transporter substrate-binding protein -
  JQC75_RS16890 (JQC75_16890) comM 3826538..3828064 (+) 1527 WP_203325177.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JQC75_RS16895 (JQC75_16895) - 3828299..3829162 (-) 864 WP_203325178.1 substrate-binding periplasmic protein -
  JQC75_RS16900 (JQC75_16900) - 3829239..3830141 (-) 903 WP_203325179.1 aspartyl protease family protein -
  JQC75_RS16905 (JQC75_16905) - 3830203..3831606 (-) 1404 WP_203325180.1 sensor histidine kinase -
  JQC75_RS16910 (JQC75_16910) - 3831603..3832298 (-) 696 WP_203325181.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54455.77 Da        Isoelectric Point: 8.5027

>NTDB_id=532927 JQC75_RS16890 WP_203325177.1 3826538..3828064(+) (comM) [Shewanella litorisediminis strain SMK1-12]
MAIACVATRASLGVEAPAVTVEVHLANGLPAFNLVGLPEASVKEARERVRSALVNAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAIGILAASGQIPLTSLKDREFVGELALSGDIRHCPGLLPVIVAARRGGRELILPLANRADAELVDYPAIRLCSQL
VHLVAFLHGQQPLPGLEQGAEWLDDTPSSALCLSDVIGQYQAKQALEIAAAGSHNLLMLGLPGCGKTMLASRIMGLLPPL
GYDEALEVAALHSVAGLNIKPSEFHRRPFRSPHHTCSAISLVGGGSVPKPGEISLAHRGVLFLDELAEFPRKVLDCLREP
METGEVVISRAAAKLTFLSRFQLVAAMNPSPCGSMGPGSRSSPDQINRYLGRLSGPFLDRFDLSIEVPPLPPGTLTQEGN
SGETSQSVAQRVHRARERQLARAGVLNAELSGKALKNAGFNSTDLSFLEQSVNRLGLSVRSFHRLQRVARTIADLENSNT
VERRHIAQALGYRAMDRLLANLGQQLGR

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=532927 JQC75_RS16890 WP_203325177.1 3826538..3828064(+) (comM) [Shewanella litorisediminis strain SMK1-12]
ATGGCCATTGCCTGTGTCGCCACCCGTGCCAGCCTGGGGGTTGAAGCCCCGGCGGTTACCGTTGAAGTCCATCTCGCCAA
TGGCCTGCCCGCCTTTAATCTGGTTGGCCTGCCGGAGGCCTCGGTCAAAGAGGCCAGAGAGCGGGTACGCAGTGCCCTGG
TGAACGCCGGGTTCGAGTTCCCCATGCGCCGCATCACAGTGAATCTCGCCCCCGCCGATCTGCCCAAACAGGGTGGCCGT
TACGATCTGCCCATCGCCATCGGCATTCTTGCGGCCTCCGGCCAAATCCCCCTCACCAGTCTTAAAGACCGCGAGTTTGT
TGGCGAACTGGCACTGTCGGGAGATATTCGCCATTGTCCGGGTCTGCTGCCCGTTATTGTGGCGGCTCGCCGGGGTGGTC
GCGAACTTATATTGCCGCTCGCCAACCGTGCCGATGCCGAACTGGTGGATTATCCCGCCATTCGCCTGTGCAGCCAGTTG
GTACATCTGGTGGCCTTCCTTCACGGCCAGCAGCCCCTGCCGGGGCTGGAGCAGGGCGCCGAATGGCTCGATGACACGCC
AAGCAGCGCGCTTTGCCTGAGCGACGTGATTGGCCAGTATCAAGCCAAACAGGCACTGGAAATCGCCGCTGCAGGTTCAC
ACAATTTACTGATGCTGGGCCTTCCCGGCTGCGGTAAAACCATGCTCGCCAGCCGTATCATGGGGCTGCTGCCCCCCTTG
GGCTATGACGAAGCCCTCGAGGTCGCGGCGCTGCATTCAGTAGCAGGGCTCAATATCAAACCCAGCGAGTTCCACCGCCG
TCCGTTCAGGTCGCCCCACCACACCTGTTCAGCCATCTCCCTGGTGGGGGGTGGCAGTGTGCCCAAGCCCGGGGAAATCT
CCCTCGCCCACCGGGGCGTGCTGTTTCTCGATGAGCTGGCCGAATTCCCCCGCAAGGTGCTCGACTGTTTGCGCGAACCC
ATGGAAACCGGCGAAGTGGTGATTTCACGGGCAGCCGCAAAGCTCACCTTTCTCAGCCGATTTCAATTAGTTGCCGCCAT
GAACCCCAGCCCCTGCGGCAGCATGGGACCAGGCAGCCGCTCAAGCCCTGATCAGATAAACCGCTACCTCGGCAGGCTCT
CGGGCCCTTTTCTTGACCGCTTCGATTTGTCCATCGAAGTCCCCCCTCTGCCACCGGGCACCCTGACTCAGGAAGGCAAC
AGTGGTGAAACCAGCCAAAGCGTCGCCCAGCGCGTTCACCGCGCCAGGGAACGGCAGCTTGCCCGGGCAGGCGTACTGAA
TGCCGAACTCTCGGGCAAGGCACTGAAAAACGCAGGATTTAACAGCACAGACCTCAGTTTTCTTGAGCAGAGTGTCAATC
GACTTGGGCTGTCGGTACGCAGCTTTCATCGCCTGCAGCGGGTCGCCCGCACCATCGCAGATTTGGAAAACAGCAATACG
GTAGAGAGGCGCCATATCGCACAGGCGCTGGGTTACAGGGCCATGGACAGGCTGCTCGCCAATCTTGGACAGCAACTCGG
GCGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

56.324

99.606

0.561
  comM Vibrio cholerae strain A1552

54.971

100

0.555
  comM Vibrio campbellii strain DS40M4

55.227

99.803

0.551
  comM Glaesserella parasuis strain SC1401

54.545

99.606

0.543
  comM Legionella pneumophila str. Paris

46.988

98.031

0.461
  comM Legionella pneumophila strain ERS1305867

46.988

98.031

0.461
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.347

97.638

0.423