Detailed information NTG0532881

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JQM61_RS31125
• Genome accession: NZ_CP069198
• Coordinates: 6669054..6669926 (-)
• Length: 290 a.a.
• NCBI ID: WP_034037193.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain 152962
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6664054..6674926

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JQM61_RS31080 (JQM61_31080)	-	6664915..6665085 (-)	171	WP_003094672.1	DUF3094 family protein	-
JQM61_RS31085 (JQM61_31085)	-	6665111..6665560 (-)	450	WP_003094670.1	MOSC domain-containing protein	-
JQM61_RS31090 (JQM61_31090)	-	6665557..6666186 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
JQM61_RS31095 (JQM61_31095)	-	6666319..6666744 (+)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
JQM61_RS31100 (JQM61_31100)	-	6666741..6667211 (+)	471	WP_003103866.1	hypothetical protein	-
JQM61_RS31105 (JQM61_31105)	-	6667208..6667897 (+)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
JQM61_RS31110 (JQM61_31110)	-	6668003..6668212 (+)	210	WP_003094660.1	hypothetical protein	-
JQM61_RS31115 (JQM61_31115)	yacG	6668249..6668449 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
JQM61_RS31120 (JQM61_31120)	coaE	6668446..6669057 (-)	612	WP_003112838.1	dephospho-CoA kinase	-
JQM61_RS31125 (JQM61_31125)	pilD	6669054..6669926 (-)	873	WP_034037193.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
JQM61_RS31130 (JQM61_31130)	pilC	6669927..6671144 (-)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
JQM61_RS31135 (JQM61_31135)	pilB	6671148..6672848 (-)	1701	WP_003122078.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JQM61_RS31140 (JQM61_31140)	-	6673079..6673543 (+)	465	WP_023129290.1	pilin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31783.78 Da
• Isoelectric Point: 7.7068

>NTDB_id=532881 JQM61_RS31125 WP_034037193.1 6669054..6669926(-) (pilD) [Pseudomonas aeruginosa strain 152962]
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVAHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALLGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=532881 JQM61_RS31125 WP_034037193.1 6669054..6669926(-) (pilD) [Pseudomonas aeruginosa strain 152962]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAATGTCGTCGCGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTAGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCTTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	50.19	90.69	0.455