Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JOS67_RS02340 Genome accession   NZ_CP069195
Coordinates   391960..392496 (+) Length   178 a.a.
NCBI ID   WP_203346882.1    Uniprot ID   -
Organism   Vibrio diabolicus strain SLV18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 386960..397496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOS67_RS02325 (JOS67_02320) uvrA 387035..389857 (-) 2823 WP_203346881.1 excinuclease ABC subunit UvrA -
  JOS67_RS02330 (JOS67_02325) galU 390007..390879 (-) 873 WP_005397418.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  JOS67_RS02335 (JOS67_02330) qstR 391038..391682 (-) 645 WP_047009170.1 LuxR C-terminal-related transcriptional regulator Regulator
  JOS67_RS02340 (JOS67_02335) ssb 391960..392496 (+) 537 WP_203346882.1 single-stranded DNA-binding protein Machinery gene
  JOS67_RS02345 (JOS67_02340) csrD 392739..394748 (+) 2010 WP_203346883.1 RNase E specificity factor CsrD -
  JOS67_RS02350 (JOS67_02345) - 394760..396205 (+) 1446 WP_161446179.1 MSHA biogenesis protein MshI -
  JOS67_RS02355 (JOS67_02350) gspM 396202..396852 (+) 651 WP_047009166.1 type II secretion system protein GspM -
  JOS67_RS02360 (JOS67_02355) - 396845..397177 (+) 333 WP_012841368.1 hypothetical protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19849.86 Da        Isoelectric Point: 4.7381

>NTDB_id=532813 JOS67_RS02340 WP_203346882.1 391960..392496(+) (ssb) [Vibrio diabolicus strain SLV18]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRGQGDGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQQQAPQQ
PQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=532813 JOS67_RS02340 WP_203346882.1 391960..392496(+) (ssb) [Vibrio diabolicus strain SLV18]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAACGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGTTCTCAAGTATACATT
GAAGGCCAACTGCAAACTCGTAAATGGCAAGACCAAAGCGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
TAACGGCGTGATGCAAATGCTGGGCGGTCGTGGTCAAGGTGACGGCGCACCAATGGGCGGTCAACAGCAGCAGCAAGGTG
GATGGGGTCAGCCTCAACAACCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACAACAGCAGGCTCCGCAGCAA
CCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.121

100

0.809
  ssb Glaesserella parasuis strain SC1401

55.556

100

0.59
  ssb Neisseria meningitidis MC58

46.369

100

0.466
  ssb Neisseria gonorrhoeae MS11

43.316

100

0.455