Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   JOS67_RS02335 Genome accession   NZ_CP069195
Coordinates   391038..391682 (-) Length   214 a.a.
NCBI ID   WP_047009170.1    Uniprot ID   A0AAE4M8A3
Organism   Vibrio diabolicus strain SLV18     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 386038..396682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOS67_RS02325 (JOS67_02320) uvrA 387035..389857 (-) 2823 WP_203346881.1 excinuclease ABC subunit UvrA -
  JOS67_RS02330 (JOS67_02325) galU 390007..390879 (-) 873 WP_005397418.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  JOS67_RS02335 (JOS67_02330) qstR 391038..391682 (-) 645 WP_047009170.1 LuxR C-terminal-related transcriptional regulator Regulator
  JOS67_RS02340 (JOS67_02335) ssb 391960..392496 (+) 537 WP_203346882.1 single-stranded DNA-binding protein Machinery gene
  JOS67_RS02345 (JOS67_02340) csrD 392739..394748 (+) 2010 WP_203346883.1 RNase E specificity factor CsrD -
  JOS67_RS02350 (JOS67_02345) - 394760..396205 (+) 1446 WP_161446179.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24454.37 Da        Isoelectric Point: 9.5188

>NTDB_id=532812 JOS67_RS02335 WP_047009170.1 391038..391682(-) (qstR) [Vibrio diabolicus strain SLV18]
MRKSAYARKLFLISMEDNAEKKVAALEKYIDMSIPVISTEALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGLFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNGQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=532812 JOS67_RS02335 WP_047009170.1 391038..391682(-) (qstR) [Vibrio diabolicus strain SLV18]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGGAAAAAAAGGTGGCAGCACTCGA
AAAGTACATTGATATGAGCATCCCGGTGATTTCGACCGAAGCACTCATGGAAGCTAAGCCACAGCATCGTAACAAAATCC
TACTGATCGACTTCAGTGAACATAAATCACTCGTTCAATCGATCAAAAACTTACCGCTGGTATGGAAGAACTTTGAAACC
GTTGTGTTCAATGTCCCTAAAAGGCTGACCACGGATGAGCTTCTTTCATTTGGTCAATTAAAGGGGCTGTTCTATTCCGA
AGATACGCTAGAGCAAATTGGAGAGGGATTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGTAACGTCATTAATACTCATACTGCCCCAGCCACGGTAGACCTAACCATTCGCGAGCTGCAA
GTACTGCGTTGCTTGCAAGCTGGTGCCTCGAACGGCCAAATGGCCGAGGAATTATTTGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCAGTGAAGAATCGCGTTCAAGCAATCGCGTGGGCAGATCAAAACTTAATGT
CATGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

95.327

100

0.953
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.804

100

0.528